BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780204|ref|YP_003064617.1| hypothetical protein
CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62]
         (180 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039881|gb|ACT56677.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 180

 Score =  335 bits (860), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 180/180 (100%), Positives = 180/180 (100%)

Query: 1   MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK 60
           MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK
Sbjct: 1   MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK 60

Query: 61  KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE 120
           KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE
Sbjct: 61  KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE 120

Query: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH 180
           RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH
Sbjct: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH 180


>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 252

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 91  LVVTAILAILLSIAIPTIEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEH 150
           L V  + ++ L+I    +EE + +NDIKYE +Q I  K KE    E L + +E  ACL  
Sbjct: 57  LWVIFVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQ 116

Query: 151 PNRY 154
            +RY
Sbjct: 117 YDRY 120


>gi|170100921|ref|XP_001881678.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643637|gb|EDR07889.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 272

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 63  FQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIA------IPTIEEGMTMND 116
           FQ  L+F GL   L   AS  ++L  AC    A +A+L+S        +P   +G+    
Sbjct: 11  FQVALYFPGLRRTLHAQASPSVTLNDACHHFIAYVALLISHILLSSELLPLFSKGVVFTK 70

Query: 117 IKYERKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLL 171
            + +    +    +E++    L + +     +   + + +  S  I  R+PI +L
Sbjct: 71  KRDQVTSGLQGHIQEREANAILIRTNLSCEIISPQSTHSNPPSGEINRRLPILVL 125


>gi|260948314|ref|XP_002618454.1| hypothetical protein CLUG_01913 [Clavispora lusitaniae ATCC 42720]
 gi|238848326|gb|EEQ37790.1| hypothetical protein CLUG_01913 [Clavispora lusitaniae ATCC 42720]
          Length = 482

 Score = 36.2 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 35  RHTVAETPKIMWKAFKKSSGRWQWYKKSFQYLL 67
           R  V E  K+ W  FK+  GRW WY  SF ++L
Sbjct: 236 RMKVREKTKMDWSVFKRVLGRWHWYLFSFLWVL 268


>gi|225851059|ref|YP_002731293.1| general substrate transporter [Persephonella marina EX-H1]
 gi|225645698|gb|ACO03884.1| general substrate transporter [Persephonella marina EX-H1]
          Length = 425

 Score = 35.4 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 15/107 (14%)

Query: 15  YGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKS-----------SGRWQWYK--- 60
           +G  IL F  +++  +  Y R  + ETPK      KK+             + +++K   
Sbjct: 184 WGWRILFFTGILLGFIGYYVRRNIEETPKFRELEEKKAVDKHPVRDLFKEAKLKFFKTFS 243

Query: 61  -KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIP 106
             +FQ + F++   Y+  H + FV    +  L +  I  I+L+I IP
Sbjct: 244 LSTFQAVGFYTIFVYIANHLSVFVKFPKATALTINTISMIILAILIP 290


>gi|163785523|ref|ZP_02180104.1| General substrate transporter [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879209|gb|EDP73132.1| General substrate transporter [Hydrogenivirga sp. 128-5-R1-1]
          Length = 332

 Score = 34.6 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 10  KATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIM---WKAFKKSSGRWQWYKK----- 61
           +A   +G  +L F  VI+  V  Y R  + ETPK +   ++  K  S   + + K     
Sbjct: 86  EALYSWGWRVLFFTGVILGFVGYYVRKHIDETPKFLELEYEELKAKSPLKELFGKGKSKL 145

Query: 62  -------SFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTI 108
                  +FQ + F++   Y   H + FV    S  L +  +  I+L++ IP +
Sbjct: 146 AKTFALSTFQAVGFYTIFVYTASHLSVFVKFPKSIALTINTVSMIILALLIPVM 199


>gi|152970613|ref|YP_001335722.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150955462|gb|ABR77492.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 1038

 Score = 34.6 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 51  KSSGRWQWYKKSFQYLLFF--SGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTI 108
           KSS    W+   F  L  F  +GL ++L  +   ++   + CL + A L+ L S  +P  
Sbjct: 506 KSSVFSAWFNAHFHRLTSFYATGLGFVLKRTGRMMMIYAALCLALFAGLSTLPSSFLPDE 565

Query: 109 EEGMTMNDIKYERKQVISRKAKEKDLEE 136
           ++G  M+ I+      + R  K  D  E
Sbjct: 566 DQGYFMSSIQLPSDATMQRTLKVVDTFE 593


>gi|291412341|ref|XP_002722441.1| PREDICTED: Rho-associated coiled-coil containing protein kinase
           2-like [Oryctolagus cuniculus]
          Length = 1461

 Score = 33.8 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 99  ILLSIAIPTIEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEHPN 152
           + L I   T +  +T ND+K + +QV S +  EK L +    ++E    LE  N
Sbjct: 794 LTLKIEQETQKRCLTQNDLKMQTQQVSSLRVSEKQLRQENSHLTEVRVSLEKQN 847


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.324    0.137    0.404 

Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,839,546,093
Number of Sequences: 13984884
Number of extensions: 78258462
Number of successful extensions: 380157
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 380137
Number of HSP's gapped (non-prelim): 39
length of query: 180
length of database: 4,792,584,752
effective HSP length: 130
effective length of query: 50
effective length of database: 2,974,549,832
effective search space: 148727491600
effective search space used: 148727491600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.8 bits)