RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780204|ref|YP_003064617.1| hypothetical protein
CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62]
         (180 letters)



>gnl|CDD|39447 KOG4246, KOG4246, KOG4246, Predicted DNA-binding protein, contains
           SAP domain [General function prediction only].
          Length = 1194

 Score = 29.4 bits (65), Expect = 0.63
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 6/55 (10%)

Query: 116 DIKYERKQVISRKAKEKDLE----ESLYQISEFAACLEHPNRYWHTDSASIGFRV 166
             K   K+V  RK  E D +    E  Y + +    +  P     + S     + 
Sbjct: 724 VKKKIIKKVEERKVAEIDNKRDGDEKKYGLPDEKKIMVVPK--KSSKSGKFDCKP 776


>gnl|CDD|36686 KOG1473, KOG1473, KOG1473, Nucleosome remodeling factor, subunit
           NURF301/BPTF [Chromatin structure and dynamics,
           Transcription].
          Length = 1414

 Score = 28.9 bits (64), Expect = 0.74
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 96  ILAILLSIAIPTIEEGMTMNDIKYERKQVISRKAKEKDLEESLYQI---SEFAACLEHPN 152
            LA+  S     + E  + ++ K ERK+++ R++  K LEE++        +   +++  
Sbjct: 785 WLALEESPRGVIVGEFKSESNRKQERKELLVRRSGGKQLEENICSGALSCYWPKQMDNWL 844

Query: 153 RYWHTDSASIGFRV 166
           R  H+   S G  V
Sbjct: 845 RIEHSIFQSNGVTV 858


>gnl|CDD|34577 COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and
           secretion / Intracellular trafficking and secretion].
          Length = 181

 Score = 28.8 bits (64), Expect = 0.96
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 91  LVVTAILAILLSIAIP 106
           L+V AILAIL  IA P
Sbjct: 16  LIVLAILAILAVIAAP 31


>gnl|CDD|37417 KOG2206, KOG2206, KOG2206, Exosome 3'-5' exoribonuclease complex,
           subunit PM/SCL-100 (Rrp6) [Translation, ribosomal
           structure and biogenesis].
          Length = 687

 Score = 27.7 bits (61), Expect = 1.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHP 151
            K  I    + + L E L  + EFA  LEH 
Sbjct: 192 PKVWICTLGELEALPEILDSVIEFAVDLEHH 222


>gnl|CDD|39173 KOG3970, KOG3970, KOG3970, Predicted E3 ubiquitin ligase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 299

 Score = 27.7 bits (61), Expect = 2.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 33  YFRHTVAETPKIMWKAFKKSSGRWQWYKKSFQYLLFFSGLSYLLF 77
           Y R    +  + +W+A    SGR Q  KK   +L+F   L+++  
Sbjct: 223 YKRRPTMDWMRRLWRAKHGGSGRPQEAKKRALFLIFLGVLAFITI 267


>gnl|CDD|144369 pfam00740, Parvo_coat, Parvovirus coat protein VP2.  This protein,
           together with VP1 forms a capsomer. Both of these
           proteins are formed from the same transcript using
           alternative splicing. As a result, VP1 and VP2 differ
           only in the N-terminal region of VP1. VP2 is involved in
           packaging the viral DNA.
          Length = 522

 Score = 27.7 bits (62), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 6/34 (17%)

Query: 23  LSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRW 56
            S IV   YS  + TV    K+ W+  +++S RW
Sbjct: 475 DSRIVQ--YSTGQWTV----KLTWELKRRASKRW 502


>gnl|CDD|35768 KOG0548, KOG0548, KOG0548, Molecular co-chaperone STI1
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 539

 Score = 26.9 bits (59), Expect = 3.2
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 110 EGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSAS 161
            G  + +   E ++V  +  KEK+L  + Y+  +F   ++H  +     +  
Sbjct: 206 NGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDI 257


>gnl|CDD|35176 COG5617, COG5617, Predicted integral membrane protein [Function
           unknown].
          Length = 801

 Score = 26.4 bits (58), Expect = 5.0
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 16  GGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQ------WYKKSFQYLLFF 69
              ++S +++  +  Y +   T     K  +       G W       WY   + +L ++
Sbjct: 12  LISVISLIALYGNGSYPWGIDTYGHLFKAWFLYHSLKDGNWYPPWCEYWYN-GYPFLRYY 70

Query: 70  SGLSYLLFHSASFVLSLTSACLVVTAILAILL 101
             LSYL+  + +F+L        V  +LA LL
Sbjct: 71  PPLSYLIGAALNFLLGDVVTTYAVFLMLAFLL 102


>gnl|CDD|34524 COG4915, XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein
           [General function prediction only].
          Length = 204

 Score = 26.4 bits (58), Expect = 5.1
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 17/91 (18%)

Query: 68  FFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPT-----------------IEE 110
           F   L Y L      +       L++   + I + I                      E 
Sbjct: 4   FDMMLGYGLLGIVVVIFGGILFFLILKMSIGISIVIGNADEAEEYYKDKKMSKRERLHEA 63

Query: 111 GMTMNDIKYERKQVISRKAKEKDLEESLYQI 141
           G+T  D KY R+ +   + K K LE+ L Q 
Sbjct: 64  GLTDKDYKYIRENLEEARQKIKRLEKLLKQE 94


>gnl|CDD|32348 COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell
           motility and secretion / Intracellular trafficking and
           secretion].
          Length = 149

 Score = 26.2 bits (56), Expect = 5.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 91  LVVTAILAILLSIAIPTI 108
           LVV AI+ IL ++A+P++
Sbjct: 16  LVVLAIIGILAALALPSL 33


>gnl|CDD|34575 COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and
           secretion / Intracellular trafficking and secretion].
          Length = 139

 Score = 26.1 bits (57), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 91  LVVTAILAILLSIAIPT 107
           ++V AI+ IL  IA P+
Sbjct: 14  MIVVAIVGILALIAYPS 30


>gnl|CDD|31944 COG1758, RpoZ, DNA-directed RNA polymerase, subunit K/omega
           [Transcription].
          Length = 74

 Score = 25.6 bits (56), Expect = 7.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 103 IAIPTIEEGMTMNDIKYERKQVISRKAKE 131
           +A PTIE+ +     +YE   V +++A++
Sbjct: 1   MARPTIEDLLDKVGNRYELVVVAAKRARQ 29


>gnl|CDD|29816 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II
          core catalytic domain. ThrRS is a homodimer. It is
          responsible for the attachment of threonine to the 3'
          OH group of ribose of the appropriate tRNA. This domain
          is primarily responsible for ATP-dependent formation of
          the enzyme bound aminoacyl-adenylate. Class II
          assignment is based upon its structure and the presence
          of three characteristic sequence motifs in the core
          domain..
          Length = 298

 Score = 25.5 bits (56), Expect = 9.2
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 16 GGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYKKSFQYLLFFSGLSYL 75
          G +I + L   +  +     +   ETP I  K   ++SG W  Y+++  +        Y 
Sbjct: 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYREN-MFPFEEEDEEYG 87

Query: 76 L 76
          L
Sbjct: 88 L 88


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0718    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,153,863
Number of extensions: 106748
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 45
Length of query: 180
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,362,145
Effective search space: 401317340
Effective search space used: 401317340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.6 bits)