RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780204|ref|YP_003064617.1| hypothetical protein
CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62]
         (180 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 32.9 bits (75), Expect = 0.023
 Identities = 8/32 (25%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 116 DIKYERKQVISRKAK-EKDLEESLYQISEFAA 146
           ++KY ++Q+++R+A+ +  +E  L  +   A 
Sbjct: 25  NMKYRKRQLVTREAQIKDWVENELEALKLEAE 56



 Score = 28.7 bits (64), Expect = 0.54
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 17/62 (27%)

Query: 110 EGMTMNDIK-Y--ERKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRV 166
           E +   D   +  ER + I  +A+   L  +  Q           N ++  D   I    
Sbjct: 56  EEIPSEDQNEFLLERTREIHNEAE-SQLRAAQQQWG---------NDFYKRDP-RIA--- 101

Query: 167 PI 168
           P+
Sbjct: 102 PL 103


>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2,
           DNA binding domain, HERR2, hormone nuclear receptor; NMR
           {Homo sapiens} (A:)
          Length = 98

 Score = 25.9 bits (56), Expect = 3.0
 Identities = 6/30 (20%), Positives = 15/30 (50%)

Query: 108 IEEGMTMNDIKYERKQVISRKAKEKDLEES 137
           ++ GM    ++ +R +   +K K +   E+
Sbjct: 68  LKVGMLKEGVRLDRVRGGRQKYKRRLDSEN 97


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 25.9 bits (57), Expect = 3.1
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 21/41 (51%)

Query: 102 SIA-IPTIEE--------GMTMNDIKYERKQVISRKAKEKD 133
           S+A + +IE         GMTM        QV    A  +D
Sbjct: 1   SLADVMSIESLVEVVFYRGMTM--------QV----AVPRD 29


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,327,691
Number of extensions: 53538
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 11
Length of query: 180
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 97
Effective length of database: 2,150,234
Effective search space: 208572698
Effective search space used: 208572698
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)