RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780204|ref|YP_003064617.1| hypothetical protein
CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62]
         (180 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.7 bits (82), Expect = 0.006
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 60/171 (35%)

Query: 4   KGYDILK------AT--VDYGGLILSFLSVIVS-PV--------YSYFRHTVAETPKIMW 46
           +G +IL+       T   DY       LS+ +S P+        Y      +  TP  + 
Sbjct: 211 QGLNILEWLENPSNTPDKDY------LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264

Query: 47  KAFKKSSGRWQ-------------WYKKSFQY-------LLFFSGL-SYLLFHSASFVLS 85
              K ++G  Q             W  +SF         +LFF G+  Y  + + S   S
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSW--ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322

Query: 86  LTSACL-----VVTAILAIL-LSIAIPTIEEGMT-MNDIKY--ERKQV-IS 126
           +    L     V + +L+I  L+     +++ +   N   +    KQV IS
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQE--QVQDYVNKTN--SHLPAGKQVEIS 369


>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane
           protein, DNA binding protein, contractIle protein, cell
           adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria
           gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
          Length = 158

 Score = 31.2 bits (69), Expect = 0.13
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 91  LVVTAILAILLSIAIP 106
           ++V AI+ IL ++A+P
Sbjct: 7   MIVIAIVGILAAVALP 22


>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion,
           pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A
           {Pseudomonas aeruginosa} SCOP: d.24.1.1
          Length = 144

 Score = 30.2 bits (67), Expect = 0.23
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 91  LVVTAILAILLSIAIPTI 108
           ++V AI+ IL +IAIP  
Sbjct: 7   MIVVAIIGILAAIAIPQY 24


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 29.8 bits (66), Expect = 0.39
 Identities = 8/22 (36%), Positives = 18/22 (81%)

Query: 116  DIKYERKQVISRKAKEKDLEES 137
            ++KY ++Q+++R+A+ KD  E+
Sbjct: 1245 NMKYRKRQLVTREAQIKDWVEN 1266



 Score = 28.2 bits (62), Expect = 1.1
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 98  AILLSIAIPTIEEGMTMNDIKYERKQVISRKAKEKDLEESLYQIS-EFAACLEHPNRYWH 156
           +IL    I  IE  +  N    E+K++I     E+DLE   ++ S E A   +H     H
Sbjct: 897 SILEHSGIRLIEPEL-FNGYNPEKKEMIQEVIVEEDLEP--FEASKETAEQFKHQ----H 949

Query: 157 TDSASIGFRVP 167
            D   I F +P
Sbjct: 950 GDKVDI-FEIP 959


>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA
           binding domain, HERR2, hormone nuclear receptor; NMR
           {Homo sapiens} SCOP: g.39.1.2
          Length = 98

 Score = 28.1 bits (62), Expect = 1.3
 Identities = 6/30 (20%), Positives = 15/30 (50%)

Query: 108 IEEGMTMNDIKYERKQVISRKAKEKDLEES 137
           ++ GM    ++ +R +   +K K +   E+
Sbjct: 68  LKVGMLKEGVRLDRVRGGRQKYKRRLDSEN 97


>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central
           six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus
           norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
          Length = 653

 Score = 27.3 bits (60), Expect = 2.3
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 53  SGRWQWYKKSFQYLLFFSGLSYLLF-HSAS 81
            G  +W+ KSF  ++   G + + F HS  
Sbjct: 341 DGTNRWFDKSFNLIVAEDGTAAVHFEHSWG 370


>2qa0_A Capsid protein; beta-barrel, icosahedral virus; 2.60A
           {Adeno-associated virus - 8} PDB: 1lp3_A
          Length = 519

 Score = 26.0 bits (57), Expect = 4.8
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 6/33 (18%)

Query: 24  SVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRW 56
           S I    YS  + +V    +I W+  K++S RW
Sbjct: 452 SFITQ--YSTGQVSV----EIEWELQKENSKRW 478


>2g8g_A Capsid; adeno-associated virus serotype 4, gene therapy,
           icosahedral virus; HET: D5M; 3.20A {Adeno-associated
           virus - 4}
          Length = 524

 Score = 25.6 bits (56), Expect = 6.6
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 6/33 (18%)

Query: 24  SVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRW 56
           S I    YS  + +V    +I W+  K+ S RW
Sbjct: 457 SFITQ--YSTGQVSV----QIDWEIQKERSKRW 483


>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
           inhibitory kinase; structural genomics, structural
           genomics consortium, SGC; 1.70A {Homo sapiens}
          Length = 311

 Score = 25.4 bits (56), Expect = 7.7
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 122 KQVISRKAKEKDLEESLYQISEFAACLEHPN 152
           K+ +S     KD    L ++       +HP 
Sbjct: 88  KRSMSPFRGPKDRARKLAEVGSHEKVGQHPC 118


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,513,707
Number of extensions: 63123
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 12
Length of query: 180
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 94
Effective length of database: 3,608,246
Effective search space: 339175124
Effective search space used: 339175124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)