BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780204|ref|YP_003064617.1| hypothetical protein
CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62]
(180 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 180
Score = 370 bits (950), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK 60
MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK
Sbjct: 1 MNLKGYDILKATVDYGGLILSFLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWYK 60
Query: 61 KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE 120
KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE
Sbjct: 61 KSFQYLLFFSGLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYE 120
Query: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH 180
RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH
Sbjct: 121 RKQVISRKAKEKDLEESLYQISEFAACLEHPNRYWHTDSASIGFRVPIYLLQFQILSMKH 180
>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 252
Score = 45.8 bits (107), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 101 LSIAIPT--IEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEHPNRY 154
LS+AI +EE + +NDIKYE +Q I K KE E L + +E ACL +RY
Sbjct: 65 LSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str.
psy62]
Length = 806
Score = 23.1 bits (48), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 54 GRWQWYKKSFQYLLFFSGLSYLLFHSASF 82
G W Y SF Y+ S ++L + A F
Sbjct: 46 GTWDVYDPSFSYITLRSPKNFLGYGGAIF 74
>gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 611
Score = 22.7 bits (47), Expect = 3.5, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 22 FLSVIVSPVYSYFRHTVAETPKIMWKAFKKSSGRWQWY 59
F + ++ V+ HTVA I + WQW+
Sbjct: 41 FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWH 78
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 22.3 bits (46), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 71 GLSYLLFHSASFVLSLTSACLVVTAILAILLSIAIPTIEEGMTMNDIKYERKQVISRKAK 130
G+S +L S ++ + C++ +++I LS+ + +I M IK+ RK+ + A
Sbjct: 88 GMSIVL---RSLLMGFGAMCMMF--VISIKLSLIVVSIVTLFLMVMIKFSRKKTNTLYAD 142
Query: 131 EKDL 134
EK L
Sbjct: 143 EKKL 146
>gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 392
Score = 22.3 bits (46), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 49 FKKSSGRWQWYKKSFQYLLFFSGLS 73
F+K G W + + +L F SG++
Sbjct: 18 FEKGKGAWLFSENGIPFLDFASGIA 42
>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 737
Score = 21.9 bits (45), Expect = 6.3, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 97 LAILLSI-AIPTIEEGMTMNDI----KYERKQVISRKAKEKDLEESL 138
L I L + +PT EEGMT ++ ER +I K+ +E L
Sbjct: 285 LGITLDLDKVPTCEEGMTAYEMMLSESQERMLMILNPEKQHKAQEIL 331
>gi|254781125|ref|YP_003065538.1| hypothetical protein CLIBASIA_05135 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 59
Score = 21.9 bits (45), Expect = 6.3, Method: Composition-based stats.
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 141 ISEFAACLEHPNRY 154
I E+ CL PNRY
Sbjct: 4 ILEYIRCLNDPNRY 17
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.325 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,523
Number of Sequences: 1233
Number of extensions: 4048
Number of successful extensions: 20
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 10
length of query: 180
length of database: 328,796
effective HSP length: 69
effective length of query: 111
effective length of database: 243,719
effective search space: 27052809
effective search space used: 27052809
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 35 (18.1 bits)