HHsearch alignment for GI: 254780205 and conserved domain: PRK12847
>PRK12847 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=547.76 Aligned_cols=283 Identities=34% Similarity=0.600 Sum_probs=270.3
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 05467789999863048531599899999999985212343344564216999999999999998999999641388778
Q gi|254780205|r 14 IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDID 93 (310)
Q Consensus 14 ~~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD 93 (310)
T Consensus 2 ~~~~k~~~y~~L~rl~kP~g~~Ll~~p~~~g~~la~~~~--------~~~~~~~~l~~ig~~l~r~ag~~iNd~~DrdiD 73 (284)
T PRK12847 2 DILQKFNAYFKLMRLHKPVGILLVFFPTLFGLLLASHSL--------LPDISLLVLFIIGSILMRSAGCIINDIFDRKID 73 (284)
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 378999999999732674448999999999999836888--------850999999999999999999899989897247
Q ss_pred CCCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 43423431010012332101100134431000345554444432100356544431166555543320010100145663
Q gi|254780205|r 94 SQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVF 173 (310)
Q Consensus 94 ~~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l 173 (310)
T Consensus 74 ~~~~RTk~RPl~~G~is~~~A~~~~~~l~~~~~~~l~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~pq~ilG~~~~~~~l 153 (284)
T PRK12847 74 KHVARTKNRPLASGALSVKQALILLFILLLIALVILLFLNKYTIYLSFIAVILIVLYPLMKRFFYWPQLFLGFTFNSGIL 153 (284)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 89879998764677767899999999999999999832779999999999999999998886301434787777652488
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 01114575432024688888742100357998887531000257203466542020466653378999999999998353
Q gi|254780205|r 174 VGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTV 253 (310)
Q Consensus 174 ~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~ 253 (310)
T Consensus 154 ~g~~a~~~~~~~~~~~L~~~~~~Wt~~~d~~yA~~D~~DD~k~Gv~S~av~~G~~~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (284)
T PRK12847 154 MAYAAVQNQLDIEAILLYIGCIFWTIGYDTIYAAQDKKDDLKIGVKSTAIYFGNKTRKWILRLYIISLILWLILGIKSSL 233 (284)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999739988789999999999999998999997154298769965643626430999999999999999999999871
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 379999999999999999998089997999999876459999999999999
Q gi|254780205|r 254 NFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIIS 304 (310)
Q Consensus 254 ~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild 304 (310)
T Consensus 234 ~~~yy~~~~~~~~~l~~~~~~i~~~~~~~~~~~F~~N~~~g~lif~giilG 284 (284)
T PRK12847 234 NNIFYLAILIAAGIFYYQYKTLDFDNPANCMYRFKANHYVGLLLFLGAVLG 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 699999999999999999999289998999999997199999999999959