HHsearch alignment for GI: 254780205 and conserved domain: PRK12874

>PRK12874 ubiA prenyltransferase; Reviewed.
Probab=100.00  E-value=0  Score=485.25  Aligned_cols=287  Identities=24%  Similarity=0.386  Sum_probs=263.4

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r   15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS   94 (310)
Q Consensus        15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~   94 (310)
T Consensus         4 ~~~ki~~~~~lik~~htiFalpf---a~~~~~la~~~~~~~~~~----~~~~l~~~~~a~v~aRsag~~iN~~~Dr~iD~   76 (291)
T PRK12874          4 FTHKLKDISELVVFKHSIFSLPF---IFIAMIVASKQKNGTGWF----GFKLLILGILAAVSARNFAMGFNRLMDRDIDK   76 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             89999999999987008988999---999999986327887875----59999999999999999998998463427535


Q ss_pred             CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             34234310100123321011001344310003455544444321003565444311665555433200101001456630
Q gi|254780205|r   95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFV  174 (310)
Q Consensus        95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~~KR~t~~p~~~lG~~~~~~~l~  174 (310)
T Consensus        77 ~~~RT~~Rpl~sG~is~~~a~~~~~~~~~~~~~~~~~lN~l~~~ls~~~l~~~~~Yp~~KRft~~~~~~LG~~~~~~pl~  156 (291)
T PRK12874         77 DNPRTANRPSVDGRISRKGMVIFIVINALIFIVVSYFINTLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIA  156 (291)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             78435787787677799999999999999999999998699999999999999999889836537099999998889999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHCC
Q ss_conf             11145754320246888887421003579988875310002572034665420204666-53378999999999998353
Q gi|254780205|r  175 GWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL-FILYGIFVLCFMVAFCLLTV  253 (310)
Q Consensus       175 g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i-~~~~~~~~~~~~~~~~~~~~  253 (310)
T Consensus       157 ~w~Av~g~~~~~~~~L~~~~~~W~~gfD~iYA~qD~e~D~~~Gl~S~p~~fG~~~~l~i~~~~h~~~~i~~~~~g~~~~l  236 (291)
T PRK12874        157 GSVAVSGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWEAHL  236 (291)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99997499989999999999999999999999775864998699765688680527999999999999999999999751


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3799999999999999999980899979999998764599999999999998652
Q gi|254780205|r  254 NFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLD  308 (310)
Q Consensus       254 ~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~lL~  308 (310)
T Consensus       237 ~~~y~i~~~i~~~ll~yqh~lv~~d~~~~~~afF~~N~~iglilf~~illd~l~~  291 (291)
T PRK12874        237 GFFAYLGVIVSALILLYEHYLVRKDFKKIDRAFFTLNGYLGIVFFIFIVLDVLFK  291 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6999999999999999999996288967999999972799999999999999739