HHsearch alignment for GI: 254780205 and conserved domain: PRK12875
>PRK12875 ubiA prenyltransferase; Reviewed.
Probab=99.82 E-value=4e-19 Score=135.55 Aligned_cols=258 Identities=17% Similarity=0.192 Sum_probs=156.7
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9863048531599899999999985212343344564216999999999--99999899999964138877843423431
Q gi|254780205|r 24 YLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIV--GAIVTRGAACTWNDLVDHDIDSQVLRTRS 101 (310)
Q Consensus 24 ~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~--G~~~~r~ag~~~Nd~~D~diD~~~~RT~~ 101 (310)
T Consensus 10 ~Ll~~SRP~~WvnTagp~~~g~~la~~~~~~~~~----~~~~~~~i~Fl~PyNllmYG----INDvfD~esD~~NPRKGG 81 (281)
T PRK12875 10 YLFRLSRPRFWLYLGGPVVVGVAYGATTVGELFS----PAAVLLFLYFLFPANIFLYG----VNDWFDADTDETNPKKDG 81 (281)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCC----HHHHHHHHHHHHHHHHHHHC----CCHHHHHHHCCCCCCCCC
T ss_conf 9999667068886130899999995566134428----89999999998777788734----423332121034887667
Q ss_pred HHHHCCCCCHHHCCCHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHH---HHHHHHHHCC
Q ss_conf 01001233210110013443-1000345554444432100356544431166-55554332001010---0145663011
Q gi|254780205|r 102 RPLPSGQCTRFQALVFAVLQ-FLISFVLLLQFNPFVICVGFALLFISLLYPF-SKRFILCPQVVLGI---GFAGGVFVGW 176 (310)
Q Consensus 102 RPl~sG~is~~~A~~~~~~l-~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~~lG~---~~~~~~l~g~ 176 (310)
T Consensus 82 ~E---~~~~~~~~~~~~v~~~~~~~~~f~l~~~~~~~~~l~~~~f~~~~YSappLRFKerP~L-DS~Sn~~yv~P~v~~~ 157 (281)
T PRK12875 82 RE---VRYRGDAAVAAIVVLTGALSLLFLAPLPLAGWPYLLAFLFLSYEYSAPPLRFKTTPVL-DSLSNGLYILPGIAAY 157 (281)
T ss_pred CC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHHHHH
T ss_conf 33---3457874457999998799999998503889999999999998613885255665030-0002023650699999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 14575432024688888742100357998887531000257203466542-02046665337899999999999835337
Q gi|254780205|r 177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFS-YQTKLWLFILYGIFVLCFMVAFCLLTVNF 255 (310)
Q Consensus 177 ~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 255 (310)
T Consensus 158 al~~g~~p--~~~~l~a~~lW~ma~HaF~AvqDI~~DR~aGI~T~AT~LGar~T~~~~~~~wl~aa~~~~~~~~p~~~~- 234 (281)
T PRK12875 158 ALASGALP--PLAAVAAGWLWAMGMHTFSAIPDIEPDRAAGIQTTATFLGRRRALAYCAGCWLLAAAVFAFVDVPFSLL- 234 (281)
T ss_pred HHHCCCCC--CHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHH-
T ss_conf 98526775--199999999999998773445777401332840000144433689999999999999996036308999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 999999999999999999808999799999987-645999999999999
Q gi|254780205|r 256 FAWIGLLIALFLTIKRIIALDISCSKQCCSFFH-SAGVVGILILICLII 303 (310)
Q Consensus 256 ~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~Fk-~n~~~g~ii~~~iil 303 (310)
T Consensus 235 ------~l~yp~~~~~~~~~~-~~~~ray~~fpaiN~~~G~~~tl~~lw 276 (281)
T PRK12875 235 ------LLIYPVLVFAILLLG-IAIDRAYWWYPAVNTAVGMLLTLGALW 276 (281)
T ss_pred ------HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------999999999996165-423368999899998999999999999