HHsearch alignment for GI: 254780205 and conserved domain: PRK12884
>PRK12884 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=366.15 Aligned_cols=277 Identities=18% Similarity=0.202 Sum_probs=238.7
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 54677899998630485315998999999999852123433445642169999999999999989999996413887784
Q gi|254780205|r 15 MGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDS 94 (310)
Q Consensus 15 ~~~~i~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~ 94 (310)
T Consensus 1 m~sklk~y~~L~r---p~~~~~~~~~~~~g~~lA~~~~~---------~~~~~~l~~l~~~l~~~a~~~iNd~~D~diD~ 68 (281)
T PRK12884 1 LRAKLKAYLDLLR---PEHGLMAGIAVVLGAILALGFLP---------DLTKALLGFLSAFFASASAFALNDYFDVEIDR 68 (281)
T ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 9278999999965---87789999999999999767999---------78999999999999999998853624084250
Q ss_pred CCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3423431010012332101100134431000345554444432100356544431166-555543320010100145663
Q gi|254780205|r 95 QVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF-SKRFILCPQVVLGIGFAGGVF 173 (310)
Q Consensus 95 ~~~RT~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~-~KR~t~~p~~~lG~~~~~~~l 173 (310)
T Consensus 69 ~n--~~~RPlpsG~is~~~A~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~lK~~~~~~~~~~~~~~g~~~l 146 (281)
T PRK12884 69 IN--RPDRPIPSGRVSLREALLLAIALFILGIVAAYLISPLAFAVVVLVLVLGILYDYKLKEYGLIGNLYVAFLTGMTFI 146 (281)
T ss_pred CC--CCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 06--8999888862789999999999999999999999999999999999999999999995765359999999999999
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHHHC
Q ss_conf 01114575432024688888742100357998887531000257203466542020466653-37899999999999835
Q gi|254780205|r 174 VGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFI-LYGIFVLCFMVAFCLLT 252 (310)
Q Consensus 174 ~g~~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~-~~~~~~~~~~~~~~~~~ 252 (310)
T Consensus 147 ~g~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~Gi~tlpv~~G~~~a~~~~~~~~i~~~~l~~~~~~~~~ 226 (281)
T PRK12884 147 FGGIAAGELITEKSWLLAAMAFLMDLGREIAKDIEDVEGDRKRGARTLAILYGEKIAGRIAAALFIIAVALSPIPYLLGW 226 (281)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999738975999999999999999999999805254198769926773277898999999999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3379999999999999999-9980899979999998764599999999999998
Q gi|254780205|r 253 VNFFAWIGLLIALFLTIKR-IIALDISCSKQCCSFFHSAGVVGILILICLIISL 305 (310)
Q Consensus 253 ~~~~~~~~~l~~~~~l~~~-i~~~~~~~~~~~~k~Fk~n~~~g~ii~~~iild~ 305 (310)
T Consensus 227 ~g~~y~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~m~l~~iaf~iga 280 (281)
T PRK12884 227 LNYLYLAPILLADLIFLYSAYRLLRSQDRETINKIRRITLTGMLLALVAFAIGA 280 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 019999999999999999999992499999999999999999999999999837