HHsearch alignment for GI: 254780205 and conserved domain: TIGR00751
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro: IPR004657 This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis. A key reaction in the biosynthesis of menaquinone involves the conversion of the soluble bicyclic naphthalenoid compound 1, 4-dihydroxy-2-naphthoic acid (DHNA) to the membrane-bound demethylmenaquinone .; GO: 0016740 transferase activity, 0009234 menaquinone biosynthetic process, 0016021 integral to membrane.
Probab=96.16 E-value=0.097 Score=29.78 Aligned_cols=224 Identities=15% Similarity=0.116 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCC-CCCHHHHCCCCCHHHCCCHHHHHHHHHCCCCC---C--CCC---CCC
Q ss_conf 9999999999899999964138877843-423-43101001233210110013443100034555---4--444---432
Q gi|254780205|r 68 FIYIVGAIVTRGAACTWNDLVDHDIDSQ-VLR-TRSRPLPSGQCTRFQALVFAVLQFLISFVLLL---Q--FNP---FVI 137 (310)
Q Consensus 68 ~l~~~G~~~~r~ag~~~Nd~~D~diD~~-~~R-T~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~---~--ln~---~~~ 137 (310)
T Consensus 33 ~~~~~~~~~~~~~~~~~~d~~d~~~g~d~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~ 112 (286)
T TIGR00751 33 LLALLTAGLLQILSNLANDYGDGVKGSDKDDRIGPLRGVGKGLITPKELKWALILSLALGALSGLALVGLAAPNLADLFW 112 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999987531000233467775101001343332101278889999999999988778999875445788999
Q ss_pred --CCHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --1003565444311665-5554332001010014566301114575432-------02468888874210035799888
Q gi|254780205|r 138 --CVGFALLFISLLYPFS-KRFILCPQVVLGIGFAGGVFVGWGALHASFS-------WPAFFLCIGTIFWVVYFDTVYAH 207 (310)
Q Consensus 138 --~l~~~~~~~~~iYp~~-KR~t~~p~~~lG~~~~~~~l~g~~av~g~~~-------~~~~~L~~~~~~Wt~~~dtiYa~ 207 (310)
T Consensus 113 ~~~~g~~~~~~~~~~~~g~~p~g~~g---~g-~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 188 (286)
T TIGR00751 113 FLGLGGLCIVGAWTYTGGSKPYGYAG---LG-DLSVLVFFGPLGVLGTWYLQAHTLDWAGLLPAVATGLLACAVLNINNL 188 (286)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC---CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987999998876521566444222---01-467777775566523455555433356776665544677777653211
Q ss_pred HHHHHHCCCCCHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 753100025720346654202-0466653378999999999998353379999999999999999998089997999999
Q gi|254780205|r 208 QDKKDDELIGVNSTARLFSYQ-TKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSF 286 (310)
Q Consensus 208 ~D~edD~k~GikSlav~~G~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~k~ 286 (310)
T Consensus 189 ~d~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~ 268 (286)
T TIGR00751 189 RDIPTDAKAGKNTLAVRLGDAKGRVYHCGLLAVAGVCLLLFALATPHSWWGWLFLLAAPLLLKAAGPVRCGRGPRELRPV 268 (286)
T ss_pred HCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 10220010241000011101334688999999999999999987678888999999888888654333204662357788
Q ss_pred HHHHHHHHH
Q ss_conf 876459999
Q gi|254780205|r 287 FHSAGVVGI 295 (310)
Q Consensus 287 Fk~n~~~g~ 295 (310)
T Consensus 269 ~~~~~~~~~ 277 (286)
T TIGR00751 269 LEDTGLGAL 277 (286)
T ss_pred HHHHHHHHH
T ss_conf 887789999