HHsearch alignment for GI: 254780205 and conserved domain: TIGR01473

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase; InterPro: IPR006369 This family describes protoheme IX farnesyltransferase, also called haeme O synthase, an enzyme that creates an intermediate in the biosynthesis of haeme A . Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor. ; GO: 0008495 protoheme IX farnesyltransferase activity, 0006783 heme biosynthetic process, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=393.85  Aligned_cols=280  Identities=20%  Similarity=0.283  Sum_probs=241.6

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             89999863048531599899999999985212343344564216999999999999998999999641388778434234
Q gi|254780205|r   20 APYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRT   99 (310)
Q Consensus        20 ~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~RT   99 (310)
T Consensus         1 k~y~~Lt---Kp~~~~L~~~t~~~G~~lA~~~~~~~~~---~~~~~~~~~~~~G~~L~~~~A~a~N~~~DrdiD~~M~RT   74 (297)
T TIGR01473         1 KDYLQLT---KPRVISLLLITAFAGMWLASGGADKLSF---LVNLPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRT   74 (297)
T ss_pred             CCHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9337788---6789999999999998762256665431---116899999999999999998797212146610017564


Q ss_pred             CCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH-HHHHCC-CCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             31010012332101100134431000345554-44443210035654-443116-6555543320010100145663011
Q gi|254780205|r  100 RSRPLPSGQCTRFQALVFAVLQFLISFVLLLQ-FNPFVICVGFALLF-ISLLYP-FSKRFILCPQVVLGIGFAGGVFVGW  176 (310)
Q Consensus       100 ~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~-ln~~~~~l~~~~~~-~~~iYp-~~KR~t~~p~~~lG~~~~~~~l~g~  176 (310)
T Consensus        75 ~~RP~v~G~~~p~~al~fg~~l~~~g~~~L~~~~N~l~A~l~~~g~f~Yv~~YT~~lKR~t~~NtviGg~~Ga~PpliGw  154 (297)
T TIGR01473        75 RNRPLVTGRISPREALAFGLLLGVLGVALLAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGW  154 (297)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHH
T ss_conf             56885436666667999999999999999999873999999999999888775120357421354253065121342404


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHH---HHHHHHHHHHHHHH-C
Q ss_conf             1457543202468888874210035799888753100025720346654202046665337---89999999999983-5
Q gi|254780205|r  177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILY---GIFVLCFMVAFCLL-T  252 (310)
Q Consensus       177 ~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~---~~~~~~~~~~~~~~-~  252 (310)
T Consensus       155 ~Av~g~~~~~~~~L~~i~F~WqPpHFwaLA~~~~dDY~~A~iPMLPvv~g~~~t~~~I~~yC~~~~~L~~~~~~~~~~~~  234 (297)
T TIGR01473       155 AAVTGSISLEAWLLFAIIFLWQPPHFWALALKYKDDYAAAGIPMLPVVKGERITKRQIALYCVYTAALFPVSLLLYFLGA  234 (297)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             01069988789999999998767889999976578886289510454162799999999999999999999999987400


Q ss_pred             CC---HHHHH-HHHHHHHHHHHHHHHHCCCC----HHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33---79999-99999999999999808999----799--99998764599999999999998
Q gi|254780205|r  253 VN---FFAWI-GLLIALFLTIKRIIALDISC----SKQ--CCSFFHSAGVVGILILICLIISL  305 (310)
Q Consensus       253 ~~---~~~~~-~~l~~~~~l~~~i~~~~~~~----~~~--~~k~Fk~n~~~g~ii~~~iild~  305 (310)
T Consensus       235 ~g~~g~~Y~~~a~~l~a~~l~~~~~~~~~~~~~~~~~~kwA~k~F~~S~~yL~~~f~~~~~~~  297 (297)
T TIGR01473       235 TGYLGWLYLIVATLLGALFLYLALKFYRDPDNYSGDRKKWARKLFKFSLIYLALLFLALLIDS  297 (297)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             020579999999999999999988444156788714568876416899999999999976179