HHsearch alignment for GI: 254780205 and conserved domain: TIGR01473
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase; InterPro: IPR006369 This family describes protoheme IX farnesyltransferase, also called haeme O synthase, an enzyme that creates an intermediate in the biosynthesis of haeme A . Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor. ; GO: 0008495 protoheme IX farnesyltransferase activity, 0006783 heme biosynthetic process, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=393.85 Aligned_cols=280 Identities=20% Similarity=0.283 Sum_probs=241.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999863048531599899999999985212343344564216999999999999998999999641388778434234
Q gi|254780205|r 20 APYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRT 99 (310)
Q Consensus 20 ~~Y~~L~R~~kp~g~~ll~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~RT 99 (310)
T Consensus 1 k~y~~Lt---Kp~~~~L~~~t~~~G~~lA~~~~~~~~~---~~~~~~~~~~~~G~~L~~~~A~a~N~~~DrdiD~~M~RT 74 (297)
T TIGR01473 1 KDYLQLT---KPRVISLLLITAFAGMWLASGGADKLSF---LVNLPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRT 74 (297)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9337788---6789999999999998762256665431---116899999999999999998797212146610017564
Q ss_pred CCHHHHCCCCCHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH-HHHHCC-CCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 31010012332101100134431000345554-44443210035654-443116-6555543320010100145663011
Q gi|254780205|r 100 RSRPLPSGQCTRFQALVFAVLQFLISFVLLLQ-FNPFVICVGFALLF-ISLLYP-FSKRFILCPQVVLGIGFAGGVFVGW 176 (310)
Q Consensus 100 ~~RPl~sG~is~~~A~~~~~~l~~l~~~~~~~-ln~~~~~l~~~~~~-~~~iYp-~~KR~t~~p~~~lG~~~~~~~l~g~ 176 (310)
T Consensus 75 ~~RP~v~G~~~p~~al~fg~~l~~~g~~~L~~~~N~l~A~l~~~g~f~Yv~~YT~~lKR~t~~NtviGg~~Ga~PpliGw 154 (297)
T TIGR01473 75 RNRPLVTGRISPREALAFGLLLGVLGVALLAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGW 154 (297)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHH
T ss_conf 56885436666667999999999999999999873999999999999888775120357421354253065121342404
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHH---HHHHHHHHHHHHHH-C
Q ss_conf 1457543202468888874210035799888753100025720346654202046665337---89999999999983-5
Q gi|254780205|r 177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILY---GIFVLCFMVAFCLL-T 252 (310)
Q Consensus 177 ~av~g~~~~~~~~L~~~~~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~---~~~~~~~~~~~~~~-~ 252 (310)
T Consensus 155 ~Av~g~~~~~~~~L~~i~F~WqPpHFwaLA~~~~dDY~~A~iPMLPvv~g~~~t~~~I~~yC~~~~~L~~~~~~~~~~~~ 234 (297)
T TIGR01473 155 AAVTGSISLEAWLLFAIIFLWQPPHFWALALKYKDDYAAAGIPMLPVVKGERITKRQIALYCVYTAALFPVSLLLYFLGA 234 (297)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01069988789999999998767889999976578886289510454162799999999999999999999999987400
Q ss_pred CC---HHHHH-HHHHHHHHHHHHHHHHCCCC----HHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33---79999-99999999999999808999----799--99998764599999999999998
Q gi|254780205|r 253 VN---FFAWI-GLLIALFLTIKRIIALDISC----SKQ--CCSFFHSAGVVGILILICLIISL 305 (310)
Q Consensus 253 ~~---~~~~~-~~l~~~~~l~~~i~~~~~~~----~~~--~~k~Fk~n~~~g~ii~~~iild~ 305 (310)
T Consensus 235 ~g~~g~~Y~~~a~~l~a~~l~~~~~~~~~~~~~~~~~~kwA~k~F~~S~~yL~~~f~~~~~~~ 297 (297)
T TIGR01473 235 TGYLGWLYLIVATLLGALFLYLALKFYRDPDNYSGDRKKWARKLFKFSLIYLALLFLALLIDS 297 (297)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 020579999999999999999988444156788714568876416899999999999976179