HHsearch alignment for GI: 254780205 and conserved domain: TIGR02235
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase; InterPro: IPR011937 This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I . The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility..
Probab=98.73 E-value=5.7e-07 Score=61.61 Aligned_cols=249 Identities=18% Similarity=0.168 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCHHHHCCCCCHHHC
Q ss_conf 8999999999852123433445642169999999999999989999996413887--78434234310100123321011
Q gi|254780205|r 37 AVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHD--IDSQVLRTRSRPLPSGQCTRFQA 114 (310)
Q Consensus 37 l~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~d--iD~~~~RT~~RPl~sG~is~~~A 114 (310)
T Consensus 14 Av~Pi~~g~A~a~~~~g-------~~~~~~f~~FL~aaililaW~NLtNDvFDs~TGiD~----~K~HS~V~LTG~r~lv 82 (293)
T TIGR02235 14 AVMPILVGTAVALGKGG-------VVHLDRFVLFLIAAILILAWINLTNDVFDSDTGIDR----FKLHSIVNLTGSRSLV 82 (293)
T ss_pred HHHHHHHHHHHHHHCCC-------CEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCCCCEEEECCCHHHH
T ss_conf 89988999899987077-------300488999999999999998406762124567551----0144435641640689
Q ss_pred CCHHHHHHHHHCCCCCCCCC-----CCCCCHHHHHHHHHHC---CCCCCCCCCC--CHHHHHHHH-HHHHHCCCCCCC--
Q ss_conf 00134431000345554444-----4321003565444311---6655554332--001010014-566301114575--
Q gi|254780205|r 115 LVFAVLQFLISFVLLLQFNP-----FVICVGFALLFISLLY---PFSKRFILCP--QVVLGIGFA-GGVFVGWGALHA-- 181 (310)
Q Consensus 115 ~~~~~~l~~l~~~~~~~ln~-----~~~~l~~~~~~~~~iY---p~~KR~t~~p--~~~lG~~~~-~~~l~g~~av~g-- 181 (310)
T Consensus 83 ~~~~n~~Ll~Gl~~i~~ls~~~~D~~Vl~Lv~~~cfLGY~YQGPPF--RLGY~GLGEpiC~~~FGPlA~AAA~~~q~~~~ 160 (293)
T TIGR02235 83 FWLANFFLLIGLVGIAALSWRSQDITVLALVGLCCFLGYLYQGPPF--RLGYQGLGEPICWLAFGPLAIAAALYAQSQSV 160 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999998886238999999999997530378742--44410313899998750899999998726552
Q ss_pred -CCCHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -43202468888----87421003579988--87531000257203466542-020466653378999999999998353
Q gi|254780205|r 182 -SFSWPAFFLCI----GTIFWVVYFDTVYA--HQDKKDDELIGVNSTARLFS-YQTKLWLFILYGIFVLCFMVAFCLLTV 253 (310)
Q Consensus 182 -~~~~~~~~L~~----~~~~Wt~~~dtiYa--~~D~edD~k~GikSlav~~G-~~~~~~i~~~~~~~~~~~~~~~~~~~~ 253 (310)
T Consensus 161 ~~~~~~~w~~~i~~G~G~~~~Ttl--iLFCsHFHQv~dD~a~GK~sP~VRLGt~~~A~~~~-w~~~~~Y~~~~~~v~~G~ 237 (293)
T TIGR02235 161 ISFSLIPWKAAILVGAGSALATTL--ILFCSHFHQVEDDLAHGKRSPVVRLGTKRAAKIVP-WVILLLYVVLLIAVIGGF 237 (293)
T ss_pred CEEEHHHHHHHHHHCCCHHHHHHH--HHHHHCCCCHHHHHHCCCCCCEEECCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 023113578788843716899999--99842346416787438988721013555888999-999999999999998626
Q ss_pred CHHHHHHHHHHH---HHHHHHHHHHCCCCHHHH--HH--HHHHHHHHHHHHHHHHH
Q ss_conf 379999999999---999999998089997999--99--98764599999999999
Q gi|254780205|r 254 NFFAWIGLLIAL---FLTIKRIIALDISCSKQC--CS--FFHSAGVVGILILICLI 302 (310)
Q Consensus 254 ~~~~~~~~l~~~---~~l~~~i~~~~~~~~~~~--~k--~Fk~n~~~g~ii~~~ii 302 (310)
T Consensus 238 ~P~~~LL~l~s~P~A~~Li~~~~~~h-~~P~~i~n~KFiA~~fh~~sG~lL~~G~~ 292 (293)
T TIGR02235 238 LPWTTLLALASLPWAVKLIRLLKQNH-NKPEQIKNSKFIAVRFHFLSGILLTLGLL 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 46999999960038999999998753-58504541379999999999999999973