HHsearch alignment for GI: 254780205 and conserved domain: pfam01040

>pfam01040 UbiA UbiA prenyltransferase family.
Probab=100.00  E-value=1.8e-35  Score=234.98  Aligned_cols=245  Identities=22%  Similarity=0.323  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCC
Q ss_conf             89999999998521234334456421699999999999999899999964138877843423431010012332101100
Q gi|254780205|r   37 AVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALV  116 (310)
Q Consensus        37 l~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~  116 (310)
T Consensus         4 ~~~~~l~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~Rpl~~g~is~~~~~~   74 (258)
T pfam01040         4 ALLPVLAGLALAAGGALD---------LLLLLLLLLALLLLQAAGNVLNDYFDREIDADNPNKPSRPLPSGRISPREALL   74 (258)
T ss_pred             HHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             999999999998579999---------99999999999999999999984851841866777888877899977999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             134431000345554444432100356544431166--555543320010100145663011145754320246888887
Q gi|254780205|r  117 FAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF--SKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGT  194 (310)
Q Consensus       117 ~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~--~KR~t~~p~~~lG~~~~~~~l~g~~av~g~~~~~~~~L~~~~  194 (310)
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ys~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T pfam01040        75 LALALLLLGLLLALLLGPLLLLLGLLGLLLGLLYSLPRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPL  154 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             99999999999999999999999999999999994464134687662102239889999999998088869999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             42100357998887531000257203466542020466653378999999999998353379999999999999999998
Q gi|254780205|r  195 IFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIA  274 (310)
Q Consensus       195 ~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~  274 (310)
T Consensus       155 ~~~~~~~~~~~~~~D~e~D~~~g~~tl~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  234 (258)
T pfam01040       155 FLLGLAILLANDIRDVEGDRKAGRRTLPVRLGEKRALALLALLLAAALLLLALLLLLLAPLLLLLAVLLAALALLRALRL  234 (258)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999703578799879985163477776999999999999999999999987899999999999999999999


Q ss_pred             HCCCCHHHHHHHHHHH
Q ss_conf             0899979999998764
Q gi|254780205|r  275 LDISCSKQCCSFFHSA  290 (310)
Q Consensus       275 ~~~~~~~~~~k~Fk~n  290 (310)
T Consensus       235 ~~~~~~~~~~~~~~~~  250 (258)
T pfam01040       235 LRRRNPEEPARLALFL  250 (258)
T ss_pred             HHCCCHHHHHHHHHHH
T ss_conf             7259988999999999