HHsearch alignment for GI: 254780205 and conserved domain: pfam01040
>pfam01040 UbiA UbiA prenyltransferase family.
Probab=100.00 E-value=1.8e-35 Score=234.98 Aligned_cols=245 Identities=22% Similarity=0.323 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHHHCCC
Q ss_conf 89999999998521234334456421699999999999999899999964138877843423431010012332101100
Q gi|254780205|r 37 AVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALV 116 (310)
Q Consensus 37 l~~p~~~~~~la~~~~~~~~~~~~~~~~~~l~l~~~G~~~~r~ag~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~ 116 (310)
T Consensus 4 ~~~~~l~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~Rpl~~g~is~~~~~~ 74 (258)
T pfam01040 4 ALLPVLAGLALAAGGALD---------LLLLLLLLLALLLLQAAGNVLNDYFDREIDADNPNKPSRPLPSGRISPREALL 74 (258)
T ss_pred HHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 999999999998579999---------99999999999999999999984851841866777888877899977999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 134431000345554444432100356544431166--555543320010100145663011145754320246888887
Q gi|254780205|r 117 FAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPF--SKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGT 194 (310)
Q Consensus 117 ~~~~l~~l~~~~~~~ln~~~~~l~~~~~~~~~iYp~--~KR~t~~p~~~lG~~~~~~~l~g~~av~g~~~~~~~~L~~~~ 194 (310)
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ys~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T pfam01040 75 LALALLLLGLLLALLLGPLLLLLGLLGLLLGLLYSLPRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPL 154 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999999999999999999999999999994464134687662102239889999999998088869999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42100357998887531000257203466542020466653378999999999998353379999999999999999998
Q gi|254780205|r 195 IFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIA 274 (310)
Q Consensus 195 ~~Wt~~~dtiYa~~D~edD~k~GikSlav~~G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~ 274 (310)
T Consensus 155 ~~~~~~~~~~~~~~D~e~D~~~g~~tl~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (258)
T pfam01040 155 FLLGLAILLANDIRDVEGDRKAGRRTLPVRLGEKRALALLALLLAAALLLLALLLLLLAPLLLLLAVLLAALALLRALRL 234 (258)
T ss_pred HHHHHHHHHHHHCCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999703578799879985163477776999999999999999999999987899999999999999999999
Q ss_pred HCCCCHHHHHHHHHHH
Q ss_conf 0899979999998764
Q gi|254780205|r 275 LDISCSKQCCSFFHSA 290 (310)
Q Consensus 275 ~~~~~~~~~~k~Fk~n 290 (310)
T Consensus 235 ~~~~~~~~~~~~~~~~ 250 (258)
T pfam01040 235 LRRRNPEEPARLALFL 250 (258)
T ss_pred HHCCCHHHHHHHHHHH
T ss_conf 7259988999999999