RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
(310 letters)
>gnl|CDD|36595 KOG1381, KOG1381, KOG1381, Para-hydroxybenzoate-polyprenyl
transferase [Coenzyme transport and metabolism].
Length = 353
Score = 174 bits (442), Expect = 3e-44
Identities = 104/294 (35%), Positives = 144/294 (48%), Gaps = 14/294 (4%)
Query: 21 PYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGA 80
PY L R G L PC WS +AA G L ++ VGA++ RGA
Sbjct: 66 PYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-------GLLPSIKMLALFGVGALLMRGA 118
Query: 81 ACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVG 140
CT NDL D D+D++V RT+ RPL SG + QA+ F Q + +LLQ N + I +G
Sbjct: 119 GCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG 178
Query: 141 FALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPA--FFLCIGTIFWV 198
+ L + + YP KRF PQ+VLG+ F G +GW AL S P+ L + + W
Sbjct: 179 ASSLALVITYPLMKRFTYWPQLVLGLTFNWGALLGWCALKGS-LSPSAVLPLYLSGVCWT 237
Query: 199 VYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWL--FILYGIFVLCFMVAFCLLTVNFF 256
+ +DT+YAHQDK+DD IGV STA F TK WL F I L T ++
Sbjct: 238 LIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASLAAAGIASDQTWPYY 297
Query: 257 AWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLFLDQF 310
A +G + A +I +DI C F S G+++ +++ L F
Sbjct: 298 AALGAVAARL--GSQIYKVDIDNPSDCWKKFKSNSNTGLILFSGIVLDTLLKSF 349
>gnl|CDD|30731 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related
prenyltransferases [Coenzyme metabolism].
Length = 289
Score = 145 bits (367), Expect = 2e-35
Identities = 86/294 (29%), Positives = 138/294 (46%), Gaps = 10/294 (3%)
Query: 14 IMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVG 73
+ + + + L R L +LP L +LAA L + +
Sbjct: 5 SLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAAS---------GLPSLKLLLLAFLA 55
Query: 74 AIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFN 133
+ R A NDL D +ID RT++RPLPSG+ + +AL+ A+L L+ L L N
Sbjct: 56 FFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLN 115
Query: 134 PFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIG 193
P + A L ++L YPF KRF PQ+VLG+ F G G A+ S A+ L +
Sbjct: 116 PLAFLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLA 175
Query: 194 TIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTV 253
I W + +D +YA QD + D G+ S LF + L L +L + ++ L +
Sbjct: 176 AILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGL 235
Query: 254 N-FFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICLIISLF 306
+GLL+A L + +I+ +D+ C + F ++G+L+ I LI+++
Sbjct: 236 LGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGLILAVL 289
>gnl|CDD|144580 pfam01040, UbiA, UbiA prenyltransferase family.
Length = 258
Score = 84.5 bits (209), Expect = 4e-17
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 11/235 (4%)
Query: 34 WHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDID 93
LA+LP L LAA G + L + ++ ++ + A ND D +ID
Sbjct: 1 LPLALLPVLAGLALAA---------GGALDLLLLLLLLLALLLLQAAGNVLNDYFDREID 51
Query: 94 SQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLY--P 151
+ SRPLPSG+ + +AL+ A+ L+ +L L P ++ +G L + LLY P
Sbjct: 52 ADNPNKPSRPLPSGRISPREALLLALALLLLGLLLALLLGPLLLLLGLLGLLLGLLYSLP 111
Query: 152 FSKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKK 211
KR L ++V+G+ F + +G A+ P L + + +D +
Sbjct: 112 RLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPLFLLGLAILLANDIRDVE 171
Query: 212 DDELIGVNSTARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALF 266
D G + + L L L L + LL + +L+A
Sbjct: 172 GDRKAGRRTLPVRLGEKRALALLALLLAAALLLLALLLLLLAPLLLLLAVLLAAL 226
>gnl|CDD|30458 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
factor) [Posttranslational modification, protein
turnover, chaperones].
Length = 304
Score = 65.6 bits (160), Expect = 2e-11
Identities = 60/270 (22%), Positives = 102/270 (37%), Gaps = 13/270 (4%)
Query: 45 TVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPL 104
T A L G + + L +G + G A +N +D DID+ + RTR RPL
Sbjct: 36 TAFAGMLLAPRGSINPLLLLLTL----LGGALGAGGAGAFNMYIDRDIDALMERTRKRPL 91
Query: 105 PSGQCTRFQALVFAVLQFLISFVLLLQF-NPFVICVG-FALLFISLLY-PFSKRFILCPQ 161
+G + +AL F ++ + F LL N +G F + F ++Y + KR PQ
Sbjct: 92 VTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRR--TPQ 149
Query: 162 VVLGIGFAGGV--FVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVN 219
++ GFAG + +GW A+ S S A L W A + K D + G+
Sbjct: 150 NIVIGGFAGAMPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIP 209
Query: 220 --STARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDI 277
+ + L + + ++A + + L+ +
Sbjct: 210 MLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFLALAWKLYRK 269
Query: 278 SCSKQCCSFFHSAGVVGILILICLIISLFL 307
K F + + L+ + L+I L
Sbjct: 270 DDRKWARKLFKYSIIYLALLFVALLIDSLL 299
>gnl|CDD|36594 KOG1380, KOG1380, KOG1380, Heme A farnesyltransferase [Coenzyme
transport and metabolism].
Length = 409
Score = 43.9 bits (103), Expect = 5e-05
Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 19/239 (7%)
Query: 36 LAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQ 95
L VL + LA P + T+ + VG + +A N + + DSQ
Sbjct: 108 LVVLTTMTGYALAPGPF------SFPTLLYT----TVGTGLCSASANAINQIFEPPFDSQ 157
Query: 96 VLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLL-LQFNPFVICVGFALLFI--SLLYPF 152
+ RT++RPL G+ + A+ FA L LL NP +G +F+ + P
Sbjct: 158 MKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTPL 217
Query: 153 SKRFILCPQVVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKD 212
+ I+ V +G A +GW A A L W + + D
Sbjct: 218 KRIHIINTWVGAVVG-AIPPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRND 276
Query: 213 DELIGVNSTA---RLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFLT 268
G A + L + L + LT +FA L + +L
Sbjct: 277 YSKAGYRMMAVTNPGLCRRVALRYSLA--FLPLSYAAPSTDLTTWWFAIESLPLNAYLA 333
>gnl|CDD|35262 KOG0039, KOG0039, KOG0039, Ferric reductase, NADH/NADPH oxidase and
related proteins [Inorganic ion transport and
metabolism, Secondary metabolites biosynthesis,
transport and catabolism].
Length = 646
Score = 33.4 bits (76), Expect = 0.079
Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 15/237 (6%)
Query: 42 LWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRS 101
L LR + W + LF + V G + S +
Sbjct: 126 RMGAFLPNLWLRVWVLFLWLGLNVGLFTWRFLQYVYLGTRHILGLCLALARGSAETLNFN 185
Query: 102 RPLPSGQCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQ 161
L R + FL S++ + F V + LL+ + P
Sbjct: 186 MALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNFFPF 245
Query: 162 VVLGIGFAGGVFVGWGALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNST 221
+V G+ + + L ++ W L + + V+ + ++ V S
Sbjct: 246 LVHGLEYTISLASELFFLPKTYKW--LLLGVVGLTGVILLILML---------IMFVLSL 294
Query: 222 A--RLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALFL-TIKRIIAL 275
R Y+ + LY +F + ++ + W+ + + + L + RI+
Sbjct: 295 PFFRRRFYEAFWYTHHLYIVFYILLIIHGGFRLLGTT-WMYIAVPVLLYILDRILRF 350
>gnl|CDD|147463 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane
calcium binding protein, which comes from an
alternatively spliced form of the same gene that
generates aspartyl beta-hydroxylase and junctin.
Aspartyl beta-hydroxylase catalyses the
post-translational hydroxylation of aspartic acid or
asparagine residues contained within epidermal growth
factor (EGF) domains of proteins.
Length = 232
Score = 32.9 bits (75), Expect = 0.13
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 53 RRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDHD 91
R+ G+ G S W++ I ++G V A W DLVD++
Sbjct: 3 RKGGLSGGSFFTWFMVIALLG--VWTSVAVVWFDLVDYE 39
>gnl|CDD|31763 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase
[Coenzyme metabolism].
Length = 303
Score = 31.3 bits (71), Expect = 0.30
Identities = 45/251 (17%), Positives = 78/251 (31%), Gaps = 31/251 (12%)
Query: 34 WHLAVLPCLWSTVLAAYPLRRAGVLGWSTIFWYLFIYIVGAIVTRGAACTWNDLVDH--- 90
A+ P + T LA + G S + ++ AI+ + ND D+
Sbjct: 20 LPAAIAPVIVGTALAFW-------YGKSFNLLVALLALIAAILLQILVNLANDYFDYKKG 72
Query: 91 -DIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLLL----QFNPFVICVGFALLF 145
D +S + L A+ +L + + V+ +G +
Sbjct: 73 TDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIA 132
Query: 146 ISLLYPFSKRFILCPQVVLGIG-FAGGVFVGWGALHAS-------FSWPAFFLCIGTIFW 197
+LY P +G+G GVF G + + SW +
Sbjct: 133 AGILYTGGPF----PLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGIL 188
Query: 198 VVYFDTVYAHQDKKDDELIGVNSTA-RLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFF 256
+ +D ++D G + A RL + L + L ++ L F
Sbjct: 189 IANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILG---LF 245
Query: 257 AWIGLLIALFL 267
GLL L L
Sbjct: 246 PVWGLLFLLAL 256
>gnl|CDD|34938 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 29.5 bits (66), Expect = 1.1
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 242 LCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILICL 301
+ + + F LL V + L++ L ++R + S SK F H + I
Sbjct: 3 IYYTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKVYRGFKHI-----LKITFIF 57
Query: 302 IISLFLD 308
I+ LF+D
Sbjct: 58 ILLLFID 64
>gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase
(glycosyltransferases) [Cell wall/membrane/envelope
biogenesis].
Length = 862
Score = 28.8 bits (64), Expect = 1.8
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 220 STARLFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIG--LLIALFLTIKRIIALDI 277
+ L S++ + W ++ +F + + CL F +G +++ + ++ I
Sbjct: 644 NFVLLLSFRGRSWNSTVHNLFPILLFILLCLTFSLFMQLLGARPRGNVYMLAMSLYSVLI 703
Query: 278 SCSKQCCSFFHSA----GVVGILILICLIISL 305
S C A G++G I +IIS
Sbjct: 704 IYSLLCAGVLAPASLFEGLLGTSGFIAIIISP 735
>gnl|CDD|34325 COG4709, COG4709, Predicted membrane protein [Function unknown].
Length = 195
Score = 28.3 bits (63), Expect = 3.0
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 20/89 (22%)
Query: 224 LFSYQTKLWLFILYGIFVLCFMVAFCLLTVNFFA---------WIGLLIALFLTIKRIIA 274
L + L L I +FV+ +VA L + +A I + +LFL I A
Sbjct: 90 LLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAGILGGVILGVESLFLIGSSISA 149
Query: 275 LDISCSKQCCSFFHSAGVVGILILICLII 303
FF G + + + + ++I
Sbjct: 150 -----------FFIGIGSLLLGLGLGIVI 167
>gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse
N-terminal cytochrome p450 with a cytochrome p450
reductase (CYPOR). NADPH cytochrome p450 reductase
serves as an electron donor in several oxygenase
systems and is a component of nitric oxide synthases
and methionine synthase reductases. CYPOR transfers two
electrons from NADPH to the heme of cytochrome p450 via
FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an
FAD-containing enzyme that catalyzes the reversible
electron transfer between NADP(H) and electron carrier
proteins such as ferredoxin and flavodoxin. Isoforms of
these flavoproteins (i.e. having a non-covalently bound
FAD as a prosthetic group) are present in chloroplasts,
mitochondria, and bacteria in which they participate in
a wide variety of redox metabolic pathways. The
C-terminal domain contains most of the NADP(H) binding
residues and the N-terminal domain interacts
non-covalently with the isoalloxazine rings of the
flavin molecule which lies largely in a large gap
betweed the two domains. Ferredoxin-NADP+ reductase
first accepts one electron from reduced ferredoxin to
form a flavin semiquinone intermediate. The enzyme then
accepts a second electron to form FADH2 which then
transfers two electrons and a proton to NADP+ to form
NADPH..
Length = 384
Score = 28.0 bits (63), Expect = 3.4
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 31 STGWHLAVLPCLWSTVLAAYPLRRAGVLGWST 62
G +LAVLP L LRR G L W T
Sbjct: 31 RAGDYLAVLP-RNPPELVRRALRRFG-LAWDT 60
>gnl|CDD|38825 KOG3619, KOG3619, KOG3619, Adenylate/guanylate cyclase [Energy
production and conversion].
Length = 867
Score = 27.2 bits (60), Expect = 6.5
Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 3/161 (1%)
Query: 108 QCTRFQALVFAVLQFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIG 167
+ F + + L L L Q + L S +L L
Sbjct: 393 RDEYFTSPLGCALLVLCFDGLY-QLLIIPRSLLLLLCLSSAFVCLLLCVVLLMPDSLQWL 451
Query: 168 FAGGVFVGWGALHASF--SWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLF 225
S + + + +F ++ + H + +L+
Sbjct: 452 SPKIFRTRIARTALSIFTVLIIYMVALINMFACLFSSCIPNHTITFSSISERCEAVPQLY 511
Query: 226 SYQTKLWLFILYGIFVLCFMVAFCLLTVNFFAWIGLLIALF 266
+ + + +F+ + LL + FA GLLI L
Sbjct: 512 FLLSCVLGLLSTAVFLRLPFMLKLLLLLIVFAAYGLLIELS 552
>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This
group contains proteins identified as sorbitol
dehydrogenases and other sugar dehydrogenases of the
medium-chain dehydrogenase/reductase family (MDR), which
includes zinc-dependent alcohol dehydrogenase and
related proteins. Sorbitol and aldose reductase are
NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose. Sorbitol
dehydrogenase is tetrameric and has a single catalytic
zinc per subunit. NAD(P)(H)-dependent oxidoreductases
are the major enzymes in the interconversion of alcohols
and aldehydes, or ketones. Related proteins include
threonine dehydrogenase, formaldehyde dehydrogenase, and
butanediol dehydrogenase. The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit. Horse
liver alcohol dehydrogenase is a dimeric enzyme and each
subunit has two domains. The NAD binding domain is in a
Rossmann fold and the catalytic domain contains a zinc
ion to which substrates bind. There is a cleft between
the domains that closes upon formation of the ternary
complex.
Length = 343
Score = 26.8 bits (60), Expect = 8.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 259 IGLLIALFLTI---KRIIALDISCSKQ 282
IGLL +L I KR+IA+DI K
Sbjct: 171 IGLLAIQWLKILGAKRVIAVDIDDEKL 197
>gnl|CDD|145408 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family
corresponds to the beta subunit of NADP transhydrogenase
in prokaryotes, and either the protein N- or C terminal
in eukaryotes. The domain is often found in conjunction
with pfam01262. Pyridine nucleotide transhydrogenase
catalyses the reduction of NAD+ to NADPH. A complete
loss of activity occurs upon mutation of Gly314 in E.
coli.
Length = 464
Score = 26.6 bits (59), Expect = 8.4
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 236 LYGI--FVLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSK--QCCSFFHSAG 291
+ GI + + FA I IA I IA + + Q + FHS
Sbjct: 32 ILGIIGMTIALIATLLGPDFTGFAQIIGAIAPGGAIGLPIAKRVEMTAMPQLVAAFHS-- 89
Query: 292 VVGI-LILICL 301
VG+ +L+ +
Sbjct: 90 FVGLAAVLVGI 100
>gnl|CDD|147584 pfam05478, Prominin, Prominin. The prominins are an emerging
family of proteins that among the multispan membrane
proteins display a novel topology. Mouse prominin and
human prominin (mouse)-like 1 (PROML1) are predicted to
contain five membrane spanning domains, with an
N-terminal domain exposed to the extracellular space
followed by four, alternating small cytoplasmic and
large extracellular, loops and a cytoplasmic C-terminal
domain. The exact function of prominin is unknown
although in humans defects in PROM1, the gene coding for
prominin, cause retinal degeneration.
Length = 809
Score = 26.5 bits (59), Expect = 9.3
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 128 LLLQFNPFVICVGFALLFISLLYPFSKRFILC 159
LL ++C +LFI LL P C
Sbjct: 87 LLRYEWGVLVCAVIGVLFI-LLMPIVGLCFCC 117
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.337 0.147 0.510
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,211,556
Number of extensions: 243717
Number of successful extensions: 1819
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 258
Length of query: 310
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 216
Effective length of database: 4,232,491
Effective search space: 914218056
Effective search space used: 914218056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 57 (25.7 bits)