RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (310 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 66/164 (40%)

Query: 82  CTWNDLVDHDIDS--QVLRTRSRPLPSGQCTRF-QAL-VFAVLQ---------FL----I 124
            T++ LV   I    + L    R         F Q L +   L+         +L    I
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIR-TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236

Query: 125 SFVL--LLQFNPF-VICVGFALLFISLLYPFSKRFILCPQVVLGI--G-----FAG---- 170
           S  L  ++Q   + V                 K        +LG   G       G    
Sbjct: 237 SCPLIGVIQLAHYVVTA---------------K--------LLGFTPGELRSYLKGATGH 273

Query: 171 --GVFVGWGALHASFSWPAFF----LCIGTIFWVVYFDTVYAHQ 208
             G+     A+  + SW +FF      I  +F++     V  ++
Sbjct: 274 SQGLVTA-VAIAETDSWESFFVSVRKAITVLFFI----GVRCYE 312



 Score = 27.2 bits (60), Expect = 5.5
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 50/127 (39%)

Query: 200 YFD------TVYAH--QDKKDDELIGVNSTARLFS-----------YQTKL----WLFIL 236
           YF+        Y     D     LI   S   L             +   L    WL   
Sbjct: 169 YFEELRDLYQTYHVLVGD-----LIKF-SAETLSELIRTTLDAEKVFTQGLNILEWLENP 222

Query: 237 YGI----FVLCFMVAFCLLTVNFFAWIGLL-IALFLTIKRIIALDISCSKQCCSFF---- 287
                  ++L   ++  L        IG++ +A ++   ++  L  +   +  S+     
Sbjct: 223 SNTPDKDYLLSIPISCPL--------IGVIQLAHYVVTAKL--LGFT-PGELRSYLKGAT 271

Query: 288 -HSAGVV 293
            HS G+V
Sbjct: 272 GHSQGLV 278


>2wy3_B UL16, uncharacterized protein UL16; immune system-viral protein
           complex, immune response, innate immunity, structural
           mimicry; HET: NAG PEU; 1.80A {Human herpesvirus 5 strain
           AD169}
          Length = 158

 Score = 28.2 bits (62), Expect = 2.6
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 177 GALHASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLF 234
            ++H   +W    +CI     + Y++ V       +DE+IGV  T +       LWL+
Sbjct: 20  ASIHPGETWTLHGMCIS----ICYYENV------TEDEIIGVAFTWQHNESVVDLWLY 67


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.337    0.147    0.510 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,797,011
Number of extensions: 124474
Number of successful extensions: 471
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 53
Length of query: 310
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 218
Effective length of database: 3,462,782
Effective search space: 754886476
Effective search space used: 754886476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (25.9 bits)