BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62] (310 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 310 Score = 616 bits (1589), Expect = e-178, Method: Compositional matrix adjust. Identities = 310/310 (100%), Positives = 310/310 (100%) Query: 1 MSQFFNFKWVRDCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGW 60 MSQFFNFKWVRDCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGW Sbjct: 1 MSQFFNFKWVRDCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGW 60 Query: 61 STIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVL 120 STIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVL Sbjct: 61 STIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVL 120 Query: 121 QFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALH 180 QFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALH Sbjct: 121 QFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALH 180 Query: 181 ASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIF 240 ASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIF Sbjct: 181 ASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIF 240 Query: 241 VLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILIC 300 VLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILIC Sbjct: 241 VLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILIC 300 Query: 301 LIISLFLDQF 310 LIISLFLDQF Sbjct: 301 LIISLFLDQF 310 >gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 305 Score = 45.1 bits (105), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 15/115 (13%) Query: 79 GAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLL-LQFNPFVI 137 GA+ N D DID + RT SRP+P GQ + ++A V V + S V++ L N Sbjct: 55 GASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAIN---- 110 Query: 138 CVGFALLFISL-----LYPF-SKRFILCPQVVLGIGFAGGV--FVGWGALHASFS 184 V LLF+S+ +Y KRF PQ ++ G AG + +GW ++ S Sbjct: 111 WVSATLLFMSIFCYVVIYTIWLKRF--TPQNIVIGGIAGAIPPMIGWASVTGDVS 163 >gi|254780994|ref|YP_003065407.1| hypothetical protein CLIBASIA_04475 [Candidatus Liberibacter asiaticus str. psy62] Length = 53 Score = 23.5 bits (49), Expect = 4.7, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 124 ISFVLLLQFNPFVICVGFALLFISLLY 150 + + LL+ NP +I +G +LF + Y Sbjct: 25 VRYTRLLEDNPILIGMGEGILFCGIFY 51 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.337 0.147 0.510 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 199,767 Number of Sequences: 1233 Number of extensions: 8225 Number of successful extensions: 32 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 9 length of query: 310 length of database: 328,796 effective HSP length: 74 effective length of query: 236 effective length of database: 237,554 effective search space: 56062744 effective search space used: 56062744 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 38 (19.2 bits)