BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (310 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 310

 Score =  616 bits (1589), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 310/310 (100%), Positives = 310/310 (100%)

Query: 1   MSQFFNFKWVRDCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGW 60
           MSQFFNFKWVRDCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGW
Sbjct: 1   MSQFFNFKWVRDCIMGSAIAPYVYLARWHSSTGWHLAVLPCLWSTVLAAYPLRRAGVLGW 60

Query: 61  STIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVL 120
           STIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVL
Sbjct: 61  STIFWYLFIYIVGAIVTRGAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVL 120

Query: 121 QFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALH 180
           QFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALH
Sbjct: 121 QFLISFVLLLQFNPFVICVGFALLFISLLYPFSKRFILCPQVVLGIGFAGGVFVGWGALH 180

Query: 181 ASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIF 240
           ASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIF
Sbjct: 181 ASFSWPAFFLCIGTIFWVVYFDTVYAHQDKKDDELIGVNSTARLFSYQTKLWLFILYGIF 240

Query: 241 VLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILIC 300
           VLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILIC
Sbjct: 241 VLCFMVAFCLLTVNFFAWIGLLIALFLTIKRIIALDISCSKQCCSFFHSAGVVGILILIC 300

Query: 301 LIISLFLDQF 310
           LIISLFLDQF
Sbjct: 301 LIISLFLDQF 310


>gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 305

 Score = 45.1 bits (105), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 15/115 (13%)

Query: 79  GAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLL-LQFNPFVI 137
           GA+   N   D DID  + RT SRP+P GQ + ++A V  V   + S V++ L  N    
Sbjct: 55  GASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAIN---- 110

Query: 138 CVGFALLFISL-----LYPF-SKRFILCPQVVLGIGFAGGV--FVGWGALHASFS 184
            V   LLF+S+     +Y    KRF   PQ ++  G AG +   +GW ++    S
Sbjct: 111 WVSATLLFMSIFCYVVIYTIWLKRF--TPQNIVIGGIAGAIPPMIGWASVTGDVS 163


>gi|254780994|ref|YP_003065407.1| hypothetical protein CLIBASIA_04475 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 53

 Score = 23.5 bits (49), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 124 ISFVLLLQFNPFVICVGFALLFISLLY 150
           + +  LL+ NP +I +G  +LF  + Y
Sbjct: 25  VRYTRLLEDNPILIGMGEGILFCGIFY 51


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.337    0.147    0.510 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,767
Number of Sequences: 1233
Number of extensions: 8225
Number of successful extensions: 32
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 9
length of query: 310
length of database: 328,796
effective HSP length: 74
effective length of query: 236
effective length of database: 237,554
effective search space: 56062744
effective search space used: 56062744
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 38 (19.2 bits)