HHsearch alignment for GI: 254780206 and conserved domain: COG1181
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=99.78 E-value=3.1e-18 Score=151.80 Aligned_cols=225 Identities=19% Similarity=0.247 Sum_probs=157.0
Q ss_pred HHCCCEEEE---CCCHHHHHH-HHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC----HHHHH
Q ss_conf 718979999---795578748-9989860588067010666555201023578887653101111223440----11111
Q gi|254780206|r 60 EKHIDLVVV---GPELPLVNG-ISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDP----MKAKQ 131 (424)
Q Consensus 60 ~~~iDlviv---gpE~pL~~g-i~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~----~ea~~ 131 (424)
T Consensus 59 ~~~~~vvfp~lhG~~g--EDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~ 136 (317)
T COG1181 59 LQKADVVFPVLHGPYG--EDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEE 136 (317)
T ss_pred HCCCCEEEEECCCCCC--CCCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHH
T ss_conf 0269877871558888--87069999997099876076445332350999988998678651235675334520478887
Q ss_pred HHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCC--CCCC-
Q ss_conf 2101242025630465343000232356778887887514453177788775205752344215776310352--0001-
Q gi|254780206|r 132 YVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTT--ARDH- 208 (424)
Q Consensus 132 ~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~--~~dy- 208 (424)
T Consensus 137 ~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~-~~d~~vl~e~~~~~rei~v~vl~~~~~~~~l~~~eI~~~~ 215 (317)
T COG1181 137 VEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAF-KYDRDVLREQGITGREIEVGVLGNDYEEQALPLGEIPPKG 215 (317)
T ss_pred HHCCCCCCEEEECCCCEEEEEEEECCEECCHHHHHHHHH-HHCCCCEECCCCCCCEEEEEECCCCCCCEECCCCEEECCC
T ss_conf 741468878998587311367998835043699999999-8478512003776655898635886552444761681699
Q ss_pred CCCCCCCCC-CCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEEC--CEEEEEEEEEEECC
Q ss_conf 113566544-444344300001234432220100000899999862046235664454489855--70489998865147
Q gi|254780206|r 209 KRIHDGDIG-PNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITE--QGPYLIEYNVRFGD 285 (424)
Q Consensus 209 Kr~~~~d~G-pnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~--~gp~viE~N~R~GD 285 (424)
T Consensus 216 ~~fydye~Ky~~~gg~~~~~pa-~lt~~~~~----~i~~lA~~a~~alg~--~g~~rvDf~~~~~~g~~~l~EvNt~PG- 287 (317)
T COG1181 216 EEFYDYEAKYLSTGGAQYDIPA-GLTDEIHE----EIKELALRAYKALGC--LGLARVDFFVDDDEGEFVLLEVNTNPG- 287 (317)
T ss_pred CEEEEEECCCCCCCCCEEECCC-CCCHHHHH----HHHHHHHHHHHHCCC--CCEEEEEEEEECCCCCEEEEEEECCCC-
T ss_conf 8698600014578984353788-99988999----999999999986088--875888799987899899998708998-
Q ss_pred CCCEEEEECC
Q ss_conf 7510443326
Q gi|254780206|r 286 PECQAMMMRL 295 (424)
Q Consensus 286 PE~q~ilp~L 295 (424)
T Consensus 288 ~t~~sl~P~~ 297 (317)
T COG1181 288 MTAMSLFPKA 297 (317)
T ss_pred CCCCCCCHHH
T ss_conf 7653537677