HHsearch alignment for GI: 254780206 and conserved domain: PRK01372
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed.
Probab=99.96 E-value=9.6e-28 Score=220.49 Aligned_cols=275 Identities=21% Similarity=0.253 Sum_probs=191.8
Q ss_pred CEEEEECCC-HHHHH--------HHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEEC--
Q ss_conf 958998865-88999--------9999985899678999549835751170551287898999999987189799997--
Q gi|254780206|r 1 MRVLLIGSG-GREHA--------LAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVG-- 69 (424)
Q Consensus 1 MkILviGsG-grEhA--------l~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivg-- 69 (424)
T Consensus 5 ~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y--~v~---------------~id~~~--~~~~~l~~~~~D~vf~~lH 65 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGY--DAH---------------PIDPGE--DPAAELKELGFDRVFNALH 65 (304)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC--EEE---------------EECCCC--CHHHHHHHCCCCEEEEECC
T ss_conf 718999367871289999999999998837599--799---------------982896--4677875339999999068
Q ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECC
Q ss_conf ---95578748998986058806701066655520102357888765310111122344011111210124202563046
Q gi|254780206|r 70 ---PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADG 146 (424)
Q Consensus 70 ---pE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVKp~~ 146 (424)
T Consensus 66 G~~GEDG~---iQglLe~~~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~l~~P~iVKP~~ 142 (304)
T PRK01372 66 GRGGEDGT---IQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDLLAAIDKLGLPLVVKPAR 142 (304)
T ss_pred CCCCCCHH---HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEECC
T ss_conf 99985649---999999859983579989987765389999999986999898499865313999987618987997668
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 534300023235677888788751445317778877520575234421577631035200--011135665444443443
Q gi|254780206|r 147 LCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTAR--DHKRIHDGDIGPNTGGMG 224 (424)
Q Consensus 147 ~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~--dyKr~~~~d~GpnTGGMG 224 (424)
T Consensus 143 ~GSSiGv~~V~~~~el~~ai~~a~~-~~~~vLvE~~I~GrEitv~Vl--g~~~--lp~~eI~~~~~fyDy~aKY~~~~s~ 217 (304)
T PRK01372 143 EGSSVGVTKVKEADELPAALELAFK-YDDEVLVEKYIKGRELTVAVL--GGKA--LPVIRIVPPGEFYDYEAKYLAGDTQ 217 (304)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHH-CCCCCEEEEEECCEEEEEEEE--CCCC--CCEEEEECCCCCCCHHHCCCCCCCC
T ss_conf 8866653896698899999999874-488625450256569999998--9977--7538994599875776612557741
Q ss_pred EEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCE-EEEEEEEEEECCCCCEEEEECCC----CCC
Q ss_conf 0000123443222010000089999986204623566445448985570-48999886514775104433265----441
Q gi|254780206|r 225 ACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFGDPECQAMMMRLE----SDI 299 (424)
Q Consensus 225 a~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~g-p~viE~N~R~GDPE~q~ilp~L~----~dl 299 (424)
T Consensus 218 ~~~Pa~-l~~~~~----~~i~~~a~~~~~aLg~--~g~aRvDf~~~~~g~~~~lEiNt~PG-mT~~Sl~P~~a~~~G~s~ 289 (304)
T PRK01372 218 YLCPAG-LPAELE----AELQALALRAYKALGC--RGWGRVDFMLDEDGKPYLLEVNTSPG-MTSHSLVPMAARAAGISF 289 (304)
T ss_pred EECCCC-CCHHHH----HHHHHHHHHHHHHHCC--CCEEEEEEEEECCCCEEEEEECCCCC-CCCCCHHHHHHHHCCCCH
T ss_conf 100689-999999----9999999999998499--73698899990799789998339999-874158999999819999
Q ss_pred HHHHHHHHHCC
Q ss_conf 15666542013
Q gi|254780206|r 300 LEILNSCVHGN 310 (424)
Q Consensus 300 ~~il~~~~~g~ 310 (424)
T Consensus 290 ~~li~~ii~~A 300 (304)
T PRK01372 290 SELVVWILEDA 300 (304)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999