HHsearch alignment for GI: 254780206 and conserved domain: PRK01390

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.17  E-value=0.34  Score=28.65  Aligned_cols=84  Identities=26%  Similarity=0.377  Sum_probs=49.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHH----
Q ss_conf             5899886588999999998589967899954983575117055128789899999998718979999795578748----
Q gi|254780206|r    2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNG----   77 (424)
Q Consensus         2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~g----   77 (424)
T Consensus        11 ~v~v~GlG~sG~s~a~~L~~~G--~~V~~~D~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~iV~SPGIp~~~p~~~~   84 (457)
T PRK01390         11 TVALFGLGGSGLATARALKAGG--AEVIAWDDNPDSVAKAAAAGIATADLRT----ADWSQFAALVLSPGVPLTHPKPHW   84 (457)
T ss_pred             EEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHCCCCCCCCCC----CCCCCCCEEEECCCCCCCCCCCHH
T ss_conf             8999943699999999999789--9799993992066899875983145541----232038789999988865667319


Q ss_pred             HHHHHHHCCCCEEE
Q ss_conf             99898605880670
Q gi|254780206|r   78 ISDALNAAGFKVFG   91 (424)
Q Consensus        78 i~d~l~~~gi~v~G   91 (424)
T Consensus        85 ~v~~a~~~gi~v~s   98 (457)
T PRK01390         85 TVDLARAAGVEVIG   98 (457)
T ss_pred             HHHHHHHCCCEEEE
T ss_conf             99999985991860