HHsearch alignment for GI: 254780206 and conserved domain: PRK03806

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=91.01  E-value=1.3  Score=24.35  Aligned_cols=85  Identities=18%  Similarity=0.182  Sum_probs=49.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCH---HHHHCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf             5899886588999999998589967899954983---5751170551287898999999987189799997955787489
Q gi|254780206|r    2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNP---GIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGI   78 (424)
Q Consensus         2 kILviGsGgrEhAl~~~l~~s~~~~~v~~~pgN~---g~~~~~~~~~i~~~d~~~i~~~a~~~~iDlvivgpE~pL~~gi   78 (424)
T Consensus         8 ~v~V~GlG~sG~s~~~~L~~~G--~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~--~~~--~~~~d~vV~SPGI~~~~p~   81 (438)
T PRK03806          8 NVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMTPPGLDKLPENVERHTGSLN--DEW--LLAADLIVASPGIALAHPS   81 (438)
T ss_pred             EEEEEEECHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHCCCCEEECCCC--HHH--HCCCCEEEECCCCCCCCHH
T ss_conf             8999945788899999999789--969999899990057886458846657779--668--0679999989978998989


Q ss_pred             HHHHHHCCCCEEEC
Q ss_conf             98986058806701
Q gi|254780206|r   79 SDALNAAGFKVFGP   92 (424)
Q Consensus        79 ~d~l~~~gi~v~Gp   92 (424)
T Consensus        82 ~~~a~~~~i~i~se   95 (438)
T PRK03806         82 LSAAADAGVEIVGD   95 (438)
T ss_pred             HHHHHHCCCCEEEH
T ss_conf             99999879947769