HHsearch alignment for GI: 254780206 and conserved domain: PRK04690
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=91.04 E-value=0.5 Score=27.44 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=45.4
Q ss_pred EEEEECCC--HHHHHHHHHHHHCCCCCEEEEECCCHHH----HHCCEE-EECCCC-CHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 58998865--8899999999858996789995498357----511705-512878-989999999871897999979557
Q gi|254780206|r 2 RVLLIGSG--GREHALAWKIAQSPLLSELWSIPGNPGI----AQHAQC-VAIDIQ-NHSAIIHFCQEKHIDLVVVGPELP 73 (424)
Q Consensus 2 kILviGsG--grEhAl~~~l~~s~~~~~v~~~pgN~g~----~~~~~~-~~i~~~-d~~~i~~~a~~~~iDlvivgpE~p 73 (424)
T Consensus 10 kv~V~GlG~sG~--aaa~~L~~~g~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~d~vv~SPGi~ 80 (468)
T PRK04690 10 RVALWGWGREGR--AAYRALRAQLPAQPL-TVFCNAEEVREVGALADAALLVETEASAQR------LAAFEVVVKSPGIS 80 (468)
T ss_pred EEEEEEECHHHH--HHHHHHHHCCCEEEE-EECCCCCCCHHHHHHCCCCCEEECCCCHHH------HHCCCEEEECCCCC
T ss_conf 799983478799--999999966990499-972883246466762045756746778557------61488999899579
Q ss_pred HHHHHHHHHHHCCCCEEECC
Q ss_conf 87489989860588067010
Q gi|254780206|r 74 LVNGISDALNAAGFKVFGPS 93 (424)
Q Consensus 74 L~~gi~d~l~~~gi~v~Gp~ 93 (424)
T Consensus 81 ~~~p~~~~a~~~~i~i~~ei 100 (468)
T PRK04690 81 PYRPEALAAAAQGTPFIGGT 100 (468)
T ss_pred CCCHHHHHHHHCCCCEEEHH
T ss_conf 86899999998799488689