HHsearch alignment for GI: 254780206 and conserved domain: PRK12815
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed.
Probab=100.00 E-value=2.9e-32 Score=253.18 Aligned_cols=284 Identities=19% Similarity=0.347 Sum_probs=222.0
Q ss_pred EEEEECCC------HHH------HHHHHHHHHCCCCCEEEEECCCHHHHH----CCEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 58998865------889------999999985899678999549835751----17055128789899999998718979
Q gi|254780206|r 2 RVLLIGSG------GRE------HALAWKIAQSPLLSELWSIPGNPGIAQ----HAQCVAIDIQNHSAIIHFCQEKHIDL 65 (424)
Q Consensus 2 kILviGsG------grE------hAl~~~l~~s~~~~~v~~~pgN~g~~~----~~~~~~i~~~d~~~i~~~a~~~~iDl 65 (424)
T Consensus 556 kvliLGsGP~RIGqgiEFDYc~vha-~~aLr~~G~--etImiN~NPETVSTDyD~sDrLYFEPlt~E~V~~I~~~E~p~g 632 (1068)
T PRK12815 556 KVLILGSGPIRIGQGIEFDYMCVHA-AFALKKEGY--ETIMINNNPETVSTDYDTADRLYFEPITLEDILNVAEAENIKG 632 (1068)
T ss_pred EEEEECCCCCEECCCCCCHHHHHHH-HHHHHHCCC--EEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCE
T ss_conf 4999567871422442400258999-999996897--4899627843123674557735753687999999999858997
Q ss_pred EEE--CCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 999--795578748998986058806701066655520102357888765310111122344011111210124202563
Q gi|254780206|r 66 VVV--GPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVK 143 (424)
Q Consensus 66 viv--gpE~pL~~gi~d~l~~~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~g~PvVVK 143 (424)
T Consensus 633 VivqfGGQt~l--nla~~L~~~gv~IlGts~~~Id~aEdR~~F~~ll~~l~i~~p~~~~~~~~~ea~~~a~~iGyPvlvR 710 (1068)
T PRK12815 633 VIVQFGGQTAI--NLAKPLEEAGLPILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATSEEEALAFAKRIGYPVLIR 710 (1068)
T ss_pred EEEECCCCCHH--HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEEC
T ss_conf 99964882367--9999999769949827868864241399999999973899999635456679999998649977842
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC-C--CCCCCCCCCCC
Q ss_conf 04653430002323567788878875144531777887752057523442157763103520001-1--13566544444
Q gi|254780206|r 144 ADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDH-K--RIHDGDIGPNT 220 (424)
Q Consensus 144 p~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~G~E~Sv~~i~dG~~~~~l~~~~dy-K--r~~~~d~GpnT 220 (424)
T Consensus 711 PSyvLgG~~m~iv~~~~eL~~y~~~a~~-~~~pvlIdkfl~g~E~evDai~Dg~~v~I~gIm-EHIE~AGVHSGDS---- 784 (1068)
T PRK12815 711 PSYVIGGQGMAVVYDEPALEAYLEENVQ-QLYPILIDQFIDGKEYEVDAISDGEDVTIPGII-EHIEQAGVHSGDS---- 784 (1068)
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHCC-CCCCEEEEECCCCCEEEEEEEECCCCEEEEEEE-ECHHHCCCCCCCC----
T ss_conf 4433577423897599999999985157-888556230005404688999649955999964-2113146656885----
Q ss_pred CCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCEEEEECC----C
Q ss_conf 344300001234432220100000899999862046235664454489855704899988651477510443326----5
Q gi|254780206|r 221 GGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRL----E 296 (424)
Q Consensus 221 GGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~gp~viE~N~R~GDPE~q~ilp~L----~ 296 (424)
T Consensus 785 ---~~v~Pp~~Ls~~~~~~i-~~~t~kia~~L---~--v~Gl~NiQfavk~~~vyVIEvNpRASR-----TvPFvSKatG 850 (1068)
T PRK12815 785 ---IAVLPPQSLSPEQQAKI-RDQAIKIAKKL---G--FRGIMNIQFLLAGDEIYVLEVNPRASR-----TVPFVSKATG 850 (1068)
T ss_pred ---EEEECCCCCCHHHHHHH-HHHHHHHHHHC---E--EECCEEEEEEEECCEEEEEEEECCCCC-----CHHHHHHHCC
T ss_conf ---48838987899999999-99999999648---3--545126999997998999996187554-----3266787329
Q ss_pred CCCHHHHHHHHHCC
Q ss_conf 44115666542013
Q gi|254780206|r 297 SDILEILNSCVHGN 310 (424)
Q Consensus 297 ~dl~~il~~~~~g~ 310 (424)
T Consensus 851 ~pl~~iAtkvmlG~ 864 (1068)
T PRK12815 851 VPLAKLATKVLLGK 864 (1068)
T ss_pred CCHHHHHHHHHCCC
T ss_conf 88999999998499