HHsearch alignment for GI: 254780206 and conserved domain: TIGR00768
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.52 E-value=1.4e-13 Score=118.06 Aligned_cols=268 Identities=17% Similarity=0.220 Sum_probs=169.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCHHHHHCCE--EEECCCCCHHHHHHHHHHHCCCEEEECCCHH-----HHHHHHHHHHH
Q ss_conf 9999999985899678999549835751170--5512878989999999871897999979557-----87489989860
Q gi|254780206|r 12 EHALAWKIAQSPLLSELWSIPGNPGIAQHAQ--CVAIDIQNHSAIIHFCQEKHIDLVVVGPELP-----LVNGISDALNA 84 (424)
Q Consensus 12 EhAl~~~l~~s~~~~~v~~~pgN~g~~~~~~--~~~i~~~d~~~i~~~a~~~~iDlvivgpE~p-----L~~gi~d~l~~ 84 (424)
T Consensus 20 ~~~L~~~~~~~~~~~~~~~~~-~~~~-~~~~P~~~~I~~~~~~~~~~~~-~~~~d~~~~R~~TPWv~~~~~~~~~r~lE~ 96 (321)
T TIGR00768 20 EKMLKEAAEERGIDYKVVTPP-EIVL-TFNQPAAFSIFYKEPRKNKELA-LAELDVVIVRIGTPWVSSFRGLAVLRALES 96 (321)
T ss_pred HHHHHHHHHHHCCCEEEECCH-HHEE-CCCCCCCCEEECCCCCCCCHHH-HCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999717953676041-2200-3688851001114541001023-117888998389975110268899999985
Q ss_pred CCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC--------CCHHHHHHHHCCC---CEEEEEECCCCCCCCC
Q ss_conf 5880670106665552010235788876531011112234--------4011111210124---2025630465343000
Q gi|254780206|r 85 AGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFS--------DPMKAKQYVQNKS---MPIVVKADGLCAGKGV 153 (424)
Q Consensus 85 ~gi~v~Gp~~~aa~le~sK~~~K~~l~~~gIPt~~~~~~~--------~~~ea~~~~~~~g---~PvVVKp~~~agGkGV 153 (424)
T Consensus 97 ~G~~~~-N~s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~PqnfDReW~~~~a~~~ie~~g~lEfP~V~Kp~~GS~G~~V 175 (321)
T TIGR00768 97 LGVPVI-NSSQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNFDREWSPEEALKLIEEIGQLEFPVVLKPVFGSWGRLV 175 (321)
T ss_pred CCCEEC-CCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEE
T ss_conf 896310-7069986214658999999958689873357366322435898899999987317642458717856354268
Q ss_pred CCHHHHHHHHHHHHHH--HC-CCCHHHHHHHHHH--CCC-CCEEEECCCCCCCCCCCCCCCCC-CCCCCC--CCCCCCCC
Q ss_conf 2323567788878875--14-4531777887752--057-52344215776310352000111-356654--44443443
Q gi|254780206|r 154 VVAATVDEATSAIDRC--FQ-QINSTVIIEEYLE--GFE-VSFFALCDGKTAIPFTTARDHKR-IHDGDI--GPNTGGMG 224 (424)
Q Consensus 154 ~i~~~~~e~~~~~~~~--~~-~~~~~VliEefl~--G~E-~Sv~~i~dG~~~~~l~~~~dyKr-~~~~d~--GpnTGGMG 224 (424)
T Consensus 176 ~l~~D~~~~~~~~e~~~~~~~~~~~~~~~QeyI~Pv~~~grDIR~fVvGd~v~aA-~----~R~~~~~~w~~N~a~GG~a 250 (321)
T TIGR00768 176 SLARDKQAAETLLEHFEQLNGPQYKVFLVQEYIKPVKPGGRDIRVFVVGDEVVAA-I----YRIITSGHWRTNLARGGKA 250 (321)
T ss_pred EEEECHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEEEE-E----EECCCCCCHHHHHHCCCCC
T ss_conf 9850678999999999721883323578872011325789318999988920133-3----5417883024355438821
Q ss_pred EEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEEEEEEECC-----EEEEEEEEEEECCCCCEEEEECCCCCC
Q ss_conf 000012344322201000008999998620462356644544898557-----048999886514775104433265441
Q gi|254780206|r 225 ACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQ-----GPYLIEYNVRFGDPECQAMMMRLESDI 299 (424)
Q Consensus 225 a~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~~~y~G~l~~~~m~t~~-----gp~viE~N~R~GDPE~q~ilp~L~~dl 299 (424)
T Consensus 251 ~--~~-~l~----~e~-~~L---A~ka~~a~g~~v~g---iDlle~~~r~dw~GL~V~EVN~~~~---f~~~~~~tgvni 313 (321)
T TIGR00768 251 E--PC-SLT----EEI-EEL---AIKAAKALGLDVAG---IDLLESKDRDDWGGLLVLEVNANPE---FKNSVKTTGVNI 313 (321)
T ss_pred C--CC-CCC----HHH-HHH---HHHHHHHHCCCEEE---EEEEECCCCCCCCCCEEEEECCCCC---CCCCEEECCCCH
T ss_conf 2--45-258----899-999---99999997683489---9776626854257837999849977---001111116776
Q ss_pred HHHHHH
Q ss_conf 156665
Q gi|254780206|r 300 LEILNS 305 (424)
Q Consensus 300 ~~il~~ 305 (424)
T Consensus 314 A~~l~~ 319 (321)
T TIGR00768 314 AGKLLD 319 (321)
T ss_pred HHHHHH
T ss_conf 899997