HHsearch alignment for GI: 254780206 and conserved domain: pfam07478
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.82 E-value=8.8e-21 Score=170.17 Aligned_cols=161 Identities=23% Similarity=0.290 Sum_probs=117.2
Q ss_pred HHHHHHHHCCCCCCCCCCH----HHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8876531011112234401----111121012420256304653430002323567788878875144531777887752
Q gi|254780206|r 109 FCTKYGIPTATYQHFSDPM----KAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE 184 (424)
Q Consensus 109 ~l~~~gIPt~~~~~~~~~~----ea~~~~~~~g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~VliEefl~ 184 (424)
T Consensus 1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~~~-~~~~vlVEefi~ 79 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEAFQ-YDNKVLIEEAIE 79 (201)
T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH-CCCCEEEEECCC
T ss_conf 9556599999908982532343579999986599889998999986687999584687999999874-598079998566
Q ss_pred CCCCCEEEECCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCC
Q ss_conf 0575234421577631035200--------01113566544444344300001234432220100000899999862046
Q gi|254780206|r 185 GFEVSFFALCDGKTAIPFTTAR--------DHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQ 256 (424)
Q Consensus 185 G~E~Sv~~i~dG~~~~~l~~~~--------dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~ 256 (424)
T Consensus 80 G~E~~v~vl~~~~~-~~~~~~e~~~~~~~~~~~~k~~~~~~-----~-~~~Pa~-l~~~~----~~~i~~~A~~~~~aLg 147 (201)
T pfam07478 80 GREIECAVLGNEDL-EVSPVGEIRLSGGFYDYEAKYILSSA-----Q-IIVPAD-LPEEV----EEQIQELALKAYKALG 147 (201)
T ss_pred CCEEEEEEEECCCE-EEEEEEEEECCCCEEEHHHEECCCCC-----E-EEECCC-CCHHH----HHHHHHHHHHHHHHHC
T ss_conf 96799999708980-89875899437750267680136872-----3-761566-85999----9999999999999848
Q ss_pred CEEEEEEEEEEEEECCE-EEEEEEEEEEC
Q ss_conf 23566445448985570-48999886514
Q gi|254780206|r 257 NPFQGVLFAGLMITEQG-PYLIEYNVRFG 284 (424)
Q Consensus 257 ~~y~G~l~~~~m~t~~g-p~viE~N~R~G 284 (424)
T Consensus 148 ~--~g~~rvD~~~d~~g~~~vlEvN~~Pg 174 (201)
T pfam07478 148 C--RGLARIDFFLTEDGEIYLNEVNTMPG 174 (201)
T ss_pred C--CCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf 8--76057999996899499999549799