HHsearch alignment for GI: 254780206 and conserved domain: pfam08443
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.82 E-value=3.6e-20 Score=165.79 Aligned_cols=167 Identities=17% Similarity=0.293 Sum_probs=118.5
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC-CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 010235788876531011112234401111121012-4202563046534300023235677888788751445317778
Q gi|254780206|r 101 SSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNK-SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVII 179 (424)
Q Consensus 101 ~sK~~~K~~l~~~gIPt~~~~~~~~~~ea~~~~~~~-g~PvVVKp~~~agGkGV~i~~~~~e~~~~~~~~~~~~~~~Vli 179 (424)
T Consensus 2 ~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~~-~~~~~vlv 80 (190)
T pfam08443 2 RDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAFK-WLKNQILV 80 (190)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHH-HCCCCEEE
T ss_conf 78899999999879797998998899999999998089838996788999845588606377778888886-34873775
Q ss_pred HHHHH---CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHCC
Q ss_conf 87752---057523442157763103520001113566544444344300001234432220100000899999862046
Q gi|254780206|r 180 EEYLE---GFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQ 256 (424)
Q Consensus 180 Eefl~---G~E~Sv~~i~dG~~~~~l~~~~dyKr~~~~d~GpnTGGMGa~~p~~~~~~~~~~~i~~~i~~~~~~~l~~~~ 256 (424)
T Consensus 81 qefI~~~~~~dirv~vi-~~~-~~~--~~~~~~~~~~~~~n~~~g~~--~~~~-----~l~~e~-~e~a~---~a~~alg 145 (190)
T pfam08443 81 QEFIAEAGNRDIRCLVV-GGE-VVG--AIHRQSNEGDFRTNLHRGGV--AEPY-----QLSQEE-EEIAI---KAAQAMG 145 (190)
T ss_pred EEEEECCCCCEEEEEEE-CCC-EEE--EEEEECCCCCCCCCCCCCCE--ECCC-----CCCHHH-HHHHH---HHHHHHC
T ss_conf 55660478854899996-063-367--89997466762143246862--4587-----668899-99999---9999738
Q ss_pred CEEEEEEEEEEEEECCEEEEEEEEEEECCC
Q ss_conf 235664454489855704899988651477
Q gi|254780206|r 257 NPFQGVLFAGLMITEQGPYLIEYNVRFGDP 286 (424)
Q Consensus 257 ~~y~G~l~~~~m~t~~gp~viE~N~R~GDP 286 (424)
T Consensus 146 l~~~g---VD~~~~~~g~~vlEvN~~Pg~~ 172 (190)
T pfam08443 146 LDVLG---VDIFRSKRGLLVCEVNSSPGLK 172 (190)
T ss_pred CCEEE---EEEEEECCCEEEEEECCCCCCH
T ss_conf 99799---9999979967999966984604