RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62] (424 letters) >gnl|CDD|30500 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]. Length = 428 Score = 546 bits (1409), Expect = e-156 Identities = 215/425 (50%), Positives = 290/425 (68%), Gaps = 9/425 (2%) Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDI-QNHSAIIHFCQ 59 M+VL+IGSGGREHALAWK+AQSPL+ ++ PGNPG A A V I+I +H A++ F + Sbjct: 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTALEAYLVNIEIDTDHEALVAFAK 60 Query: 60 EKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTAT 119 EK++DLVVVGPE PLV G+ DAL AAG VFGP++ AA+LE SK+FAK F KYGIPTA Sbjct: 61 EKNVDLVVVGPEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAE 120 Query: 120 YQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQIN----- 174 Y+ F+DP +AK Y+ K PIVVKADGL AGKGV+VA T++EA +A+D + Sbjct: 121 YEVFTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAG 180 Query: 175 STVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQ 234 + V+IEE+L+G E S A DGKT IP TA+DHKR +DGD GPNTGGMGA SPA ++ Sbjct: 181 ARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITD 240 Query: 235 ELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMR 294 E+ +++I+ PT+EGM KE PF+GVL+AGLM+T GP +IE+N RFGDPE Q ++ Sbjct: 241 EVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNARFGDPETQVVLPL 300 Query: 295 LESDILEILNSCVHGNLHNTHIN-WKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGT- 352 LESD++E+L + V G L I W A+ VV+A +GYP + G +I+ + Sbjct: 301 LESDLVELLLAAVDGKLDEVEILFWDKGAAVGVVLAAEGYPGDPEKGDVITGDEEAEEEG 360 Query: 353 TQLFHAGTAIVNN-NLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411 ++FHAG + + L +GGRVL+ G T+ E++E AY +E I + ++R+DIG Sbjct: 361 AKVFHAGVKLDDGGQLVTSGGRVLAVVGTGDTLEEAQEKAYEALEKIHFDGLFYRKDIGS 420 Query: 412 QKKER 416 + ER Sbjct: 421 RALER 425 >gnl|CDD|35458 KOG0237, KOG0237, KOG0237, Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]. Length = 788 Score = 484 bits (1247), Expect = e-137 Identities = 203/421 (48%), Positives = 287/421 (68%), Gaps = 11/421 (2%) Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQC----VAIDIQNHSAIIH 56 + VL+IGSGGREHALAWK+ QSP + +++ PGN G A + I + + A+ Sbjct: 3 VNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALAS 62 Query: 57 FCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP 116 FC+E +I+LVVVGPELPLV G++D L +AG FGPS++AA+LE+SK+F+K F ++ IP Sbjct: 63 FCKEHNINLVVVGPELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIP 122 Query: 117 TATYQHFSDPMKAKQYVQNKSMP-IVVKADGLCAGKGVVVAATVDEATSAID-----RCF 170 TA Y+ F+DP +AK ++Q+ + +V+KADGL AGKGV+VA + +EA A+D + F Sbjct: 123 TAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVF 182 Query: 171 QQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPAL 230 TV+IEE LEG EVSF A DG + P A+DHKR+ DGD GPNTGGMGA +PA Sbjct: 183 GSAGKTVVIEELLEGEEVSFLAFTDGYSVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAP 242 Query: 231 GMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQA 290 S +L TV II PT++GM +E P+ GVLFAGLM+T+ GP ++E+NVRFGDPE Q Sbjct: 243 VASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDGPKVLEFNVRFGDPETQV 302 Query: 291 MMMRLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQ-N 349 ++ LESD+ E++ +C +G L I W + A+TVV+A+ GYP Y G+II+ +P+ + Sbjct: 303 LLPLLESDLAEVILACCNGRLDTVDIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPEAD 362 Query: 350 TGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDI 409 T++FHAGT++ ++N+ NGGRVLS TA G + + E AY V+ I + ++R+DI Sbjct: 363 RPGTRVFHAGTSLDSSNVVTNGGRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDI 422 Query: 410 G 410 Sbjct: 423 A 423 >gnl|CDD|110097 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786). Length = 193 Score = 284 bits (730), Expect = 3e-77 Identities = 101/193 (52%), Positives = 134/193 (69%), Gaps = 5/193 (2%) Query: 101 SSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVD 160 SKSFAK F ++GIPTA Y+ F+DP +AK Y++ P VVKADGL AGKGV+VA + Sbjct: 1 GSKSFAKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAMDNE 60 Query: 161 EATSAIDRCFQQ-----INSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGD 215 EA A+D +Q V+IEE+LEG EVS A DGKT P A+DHKR+ +GD Sbjct: 61 EAIKAVDEILEQKKFGEAGEPVVIEEFLEGEEVSVLAFVDGKTVKPLPPAQDHKRLGEGD 120 Query: 216 IGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPY 275 GPNTGGMGA SPA ++ EL + + I+ PT++G++KE P++GVL+AGLM+T+ GP Sbjct: 121 TGPNTGGMGAYSPAPVLTPELLERIKETIVEPTVDGLRKEGIPYKGVLYAGLMLTKDGPK 180 Query: 276 LIEYNVRFGDPEC 288 ++E+N RFGDPE Sbjct: 181 VLEFNCRFGDPET 193 >gnl|CDD|145810 pfam02844, GARS_N, Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289). Length = 99 Score = 171 bits (437), Expect = 3e-43 Identities = 62/99 (62%), Positives = 78/99 (78%) Query: 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEK 61 +VL++GSGGREHALAWK+AQSP + +++ PGNPG AQ A+ V IDI + A+ F +E+ Sbjct: 1 KVLVVGSGGREHALAWKLAQSPRVEKVYVAPGNPGTAQLAKNVNIDITDFEALADFAKEE 60 Query: 62 HIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLE 100 +IDLVVVGPE PLV GI DAL AAG VFGPS+ AA+LE Sbjct: 61 NIDLVVVGPEAPLVAGIVDALRAAGIPVFGPSKAAARLE 99 >gnl|CDD|145809 pfam02843, GARS_C, Phosphoribosylglycinamide synthetase, C domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02787). Length = 92 Score = 112 bits (283), Expect = 2e-25 Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 1/91 (1%) Query: 322 YALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALG 381 A+ VV+A+KGYPE Y G I+ + ++ G +FHAGTA+ + L NGGRVL+ ALG Sbjct: 1 AAVGVVLASKGYPESYEKGIEITGLEEDEGV-LVFHAGTALEDGKLVTNGGRVLAVVALG 59 Query: 382 KTITESRELAYHMVENIDWKHGYWREDIGLQ 412 T+ E+RE AY +E ID+ ++R+DIG + Sbjct: 60 DTLEEAREKAYAALEKIDFPGLFYRKDIGTK 90 >gnl|CDD|30377 COG0027, PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]. Length = 394 Score = 58.0 bits (140), Expect = 5e-09 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 19/225 (8%) Query: 2 RVLLIGSG--GREHALAWKIAQSPLLSELWSI---PGNPGIAQHAQCVAIDIQNHSAIIH 56 +V+L+GSG G+E A I L E+ ++ P + + ID+ + A+ Sbjct: 14 KVMLLGSGELGKEVA----IEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRA 69 Query: 57 FCQEKHIDLVVVGPELPLVNGIS-DALNAAGFKVFGPSQRAAKLESSKSFAKKFCT-KYG 114 + + D +V PE+ + + L G+ V P+ RA KL ++ ++ + G Sbjct: 70 VVEREKPDYIV--PEIEAIATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELG 126 Query: 115 IPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ-- 172 +PT+ Y+ + + V+ P VVK +GKG V + ++ A + Q Sbjct: 127 LPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGR 186 Query: 173 -INSTVIIEEYLE-GFEVSFFALCDGKTAIPFTTARDHKRIHDGD 215 + VI+EE+++ FE++ + F H++ DGD Sbjct: 187 GGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPIGHRQE-DGD 230 >gnl|CDD|30788 COG0439, AccC, Biotin carboxylase [Lipid metabolism]. Length = 449 Score = 57.6 bits (139), Expect = 7e-09 Identities = 53/246 (21%), Positives = 87/246 (35%), Gaps = 20/246 (8%) Query: 48 IQNHSAIIHFCQEKHIDLVVVGPE-LPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFA 106 N AII +E D + G L ++A AG GPS A + K A Sbjct: 60 YLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITA 119 Query: 107 KKFCTKYGIPTATY--QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATS 164 ++ K G+P +D +A + P++VKA G+G+ V +E + Sbjct: 120 RRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEA 179 Query: 165 AIDRCFQQ-----INSTVIIEEYLEGFE-VSFFALCDGKTAIPFTTARDHKRIHDGDIGP 218 A + + N V +E+++EG + L DG + RD I Sbjct: 180 AFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCS------IQR 233 Query: 219 NTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIE 278 + +P+ +++EL ++ I K L + Y IE Sbjct: 234 RHQKVIEEAPSPLLTEEL-----REKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIE 288 Query: 279 YNVRFG 284 N R Sbjct: 289 MNTRLQ 294 >gnl|CDD|145680 pfam02655, ATP-grasp_3, ATP-grasp domain. No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman). Length = 160 Score = 51.2 bits (123), Expect = 6e-07 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 26/149 (17%) Query: 139 PIVVK-ADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGK 197 +VK DG C G+GV E I+ II+E++EG +S L DG+ Sbjct: 33 KYIVKPRDG-CGGEGVRFVENGREDEEFIENV--------IIQEFIEGEPLSVSLLSDGE 83 Query: 198 TAIPFTTARDHKRIHDGDIGPNTGGMGACSPALG-MSQELYSTVIQKI-ILPTIEGMQKE 255 A+P + R + G G + +P+ + +EL + + LP + G Sbjct: 84 KALPLSVNRQLI-DNAGSGFVYAGNL---TPSRTELKEELEELAEEVVEALPGLRGY--- 136 Query: 256 QNPFQGVLFAGLMITEQGPYLIEYNVRFG 284 GV L++T+ GPY+IE N R Sbjct: 137 ----VGV---DLVLTDNGPYVIEVNPRIT 158 >gnl|CDD|30806 COG0458, CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]. Length = 400 Score = 50.3 bits (120), Expect = 1e-06 Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 14/177 (7%) Query: 30 SIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVV--VGPELPLVNGI----SDALN 83 +I +P +A I + + +++ D ++ +G + L + L Sbjct: 41 TIMTDPELADKVYIEPITKE---PVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLE 97 Query: 84 AAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVK 143 G +V G A ++ K K+ + GIP + S +A + P++VK Sbjct: 98 KYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVPSRIAHS-VEEADEIADEIGYPVIVK 156 Query: 144 -ADGLCAGKGVVVAATVDEATSAIDRCFQQINST-VIIEEYLEGF-EVSFFALCDGK 197 + GL G G +A +E I+ + V+IEE + G+ E + + DGK Sbjct: 157 PSFGL-GGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGK 212 >gnl|CDD|31374 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]. Length = 317 Score = 47.6 bits (113), Expect = 6e-06 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%) Query: 82 LNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY----QHFSDPMKAKQYVQNKS 137 L G G A+ K K+ G+P A Y + + ++ + Sbjct: 83 LELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLG 142 Query: 138 MPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEV 188 P+ VK + G + SA++ F+ + V+ E+ + G E+ Sbjct: 143 FPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY-DRDVLREQGITGREI 192 >gnl|CDD|34383 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]. Length = 645 Score = 41.4 bits (97), Expect = 5e-04 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%) Query: 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQH--FSDPMKAKQYVQNKS 137 A+ AG GPS A + K AKK + G+PT H D + + Sbjct: 93 QAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIG 152 Query: 138 MPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINS-----TVIIEEYLE 184 P+++KA GKG+ V T +E A++ ++ + V IE+YL+ Sbjct: 153 YPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLD 204 >gnl|CDD|35590 KOG0369, KOG0369, KOG0369, Pyruvate carboxylase [Energy production and conversion]. Length = 1176 Score = 40.3 bits (94), Expect = 9e-04 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 54 IIHFCQEKHIDLVVVGPELPLVNG-ISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTK 112 II ++ ++D V G + A+ AG + GPS K A+ + Sbjct: 98 IISIAKKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIE 157 Query: 113 YGIPT--ATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCF 170 G+P T + +A ++V+ +P+++KA G+G+ V + ++ A R + Sbjct: 158 AGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAY 217 Query: 171 QQI-----NSTVIIEEYLE 184 + N T+ +E++LE Sbjct: 218 SEALAAFGNGTLFVEKFLE 236 >gnl|CDD|30394 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]. Length = 387 Score = 39.8 bits (93), Expect = 0.001 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Query: 106 AKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSM-PIVVKADGLCAGKG----VVVAATVD 160 AK+ KYGIP + P +A++ + P+VVKA G+G V +A + + Sbjct: 8 AKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPE 67 Query: 161 EATSAIDRCFQQINSTVIIEEYLEGFEV 188 EA A + + T I E + V Sbjct: 68 EAKEAAEEILGKNYQTDIKGEPVNKVLV 95 >gnl|CDD|30376 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]. Length = 375 Score = 39.4 bits (92), Expect = 0.002 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 92 PSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKAD-GLCAG 150 PS A ++ + K+F K G+P A +Q + + P V+K G G Sbjct: 89 PSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGYDG 148 Query: 151 KGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE-GFEVSFFA--LCDGKTAI 200 KG + + ++EE++ E+S DG+ A Sbjct: 149 KGQWRIRSDADLELRAA--GLAEGGVPVLEEFVPFEREISVIVARSNDGEVAF 199 >gnl|CDD|30538 COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]. Length = 318 Score = 38.4 bits (89), Expect = 0.003 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 27/225 (12%) Query: 78 ISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYV-QNK 136 G V Q + + +K + + K GIP DP +A ++V ++ Sbjct: 96 FLRLAERKGVPVINDPQ-SIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHL 154 Query: 137 SMPIVVKADGLCAGKGVVVAATVD-EATSAIDRCFQQINSTVIIEEYLE--GFEVSFFAL 193 P+V+K G+GV + D E S ++ Q+ +I++EY+ + + Sbjct: 155 GFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLV 214 Query: 194 CDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQ 253 G+ + AR GD N G P + E + Sbjct: 215 GGGEVVAIYALAR---IPASGDFRSNLARGGRAEP--------------CELTEEEEELA 257 Query: 254 KEQNPFQGVLFAGLMI--TEQGPYLIEYNVRFGDPECQAMMMRLE 296 + P G+ G+ I + G Y+ E NV P + + R+ Sbjct: 258 VKAAPALGLGLVGVDIIEDKDGLYVTEVNVS---PTGKGEIERVT 299 >gnl|CDD|31240 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion]. Length = 1149 Score = 37.5 bits (87), Expect = 0.006 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 7/114 (6%) Query: 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNK 136 + A AG GP + K A+ K G+P T +A ++ + Sbjct: 98 ARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEY 157 Query: 137 SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEG 185 P+++KA G+G+ V + + A +R + N V +E+ +E Sbjct: 158 GYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVEN 211 >gnl|CDD|32006 COG1821, COG1821, Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]. Length = 307 Score = 35.7 bits (82), Expect = 0.022 Identities = 44/202 (21%), Positives = 75/202 (37%), Gaps = 45/202 (22%) Query: 88 KVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP---IVVKA 144 + G S RA ++ + K TY+ D +K + P ++ A Sbjct: 100 ENLGCSPRAIRVAADKRL-------------TYKALRDAVKQPPTREWAEEPKKYVIKPA 146 Query: 145 DGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTT 204 DG C G+G+ R F I I +E++EG +S +L G+ +P + Sbjct: 147 DG-CGGEGI-----------LFGRDFPDI---EIAQEFIEGEHLSV-SLSVGEKVLPLSV 190 Query: 205 ARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLF 264 R ++ N G + +E + I+ + I G+ N + GV Sbjct: 191 NRQFIIFAGSELVYNGGRTPIDHE---LKREAFEEAIRAV--ECIPGL----NGYVGVD- 240 Query: 265 AGLMITEQGPYLIEYNVRFGDP 286 ++ PY+IE N R P Sbjct: 241 ---LVLSDEPYVIEINPRPTTP 259 >gnl|CDD|35459 KOG0238, KOG0238, KOG0238, 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism, Amino acid transport and metabolism]. Length = 670 Score = 33.4 bits (76), Expect = 0.11 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 7/113 (6%) Query: 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQH--FSDPMKAKQYVQNK 136 ++ AG GP A + KS +K+ G+P H +AK+ + Sbjct: 88 AELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREI 147 Query: 137 SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLE 184 P+++KA GKG+ +A + +E ++ Q+ + +++E++++ Sbjct: 148 GYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID 200 >gnl|CDD|32760 COG2937, PlsB, Glycerol-3-phosphate O-acyltransferase [Lipid metabolism]. Length = 810 Score = 31.1 bits (70), Expect = 0.70 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 20/100 (20%) Query: 8 SGGREHALAWKIAQ----------SPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSA 53 + LA +IA +LS W N Q+A+ + + H Sbjct: 243 AQKMADELATEIAADFSYELIRVLDRILSRGW----NRLYQGDEVQNAERRRLALDGHEI 298 Query: 54 IIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKV-FGP 92 + C HID +++ + NG+ AAG + F P Sbjct: 299 VYVPCHRSHIDYLLL-SYVLYHNGLVPPHIAAGINLNFWP 337 >gnl|CDD|145401 pfam02222, ATP-grasp, ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 171 Score = 29.9 bits (68), Expect = 1.3 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 12/76 (15%) Query: 112 KYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKA-----DGLCAGKGVVVAATVDEATSAI 166 K G+PT + + + Q P V+KA D GKG V + + A Sbjct: 3 KLGLPTPRFMAAESLEELIEAGQELGYPCVLKARRGGYD----GKGQYVVRSEADIPQAW 58 Query: 167 DRCFQQINSTVIIEEY 182 + VI+EE+ Sbjct: 59 EELG---GGPVIVEEF 71 >gnl|CDD|30175 cd01988, Na_H_Antiporter_C, The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region or C-terminal has homology with a family universal stress protein.Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.. Length = 132 Score = 29.8 bits (67), Expect = 1.3 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 24 LLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVG 69 LL + I + G+ H + ID S I+ +E+ DL+++G Sbjct: 57 LLRQAERIAASLGVPVHTI-IRIDHDIASGILRTAKERQADLIIMG 101 >gnl|CDD|38253 KOG3043, KOG3043, KOG3043, Predicted hydrolase related to dienelactone hydrolase [General function prediction only]. Length = 242 Score = 29.5 bits (66), Expect = 1.9 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 7/98 (7%) Query: 67 VVGPELPLVNGISDALNAAGFKVFGPS---QRAAKLESSKSFAKKFCTKYGIPTATYQHF 123 V G + P +D + G+ V P KS ++ + P + + Sbjct: 48 VFGFQFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPP----KIW 103 Query: 124 SDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDE 161 D ++++N + G C G VVV + + Sbjct: 104 KDITAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKD 141 >gnl|CDD|163597 pfam00100, Zona_pellucida, Zona pellucida-like domain. Length = 259 Score = 28.7 bits (64), Expect = 2.8 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 3/72 (4%) Query: 274 PYLIEYNVRFGDPECQAMMMRLESDILEI-LNSCVHGNLHNTHINWKAEYALTVVVATKG 332 P L ++ DP C+ + I + L+SC G + + Y +V + Sbjct: 19 PGLYLSSLHLRDPSCRPVETNDTFAIFQFPLSSC--GTTRSRTEGDRIVYENELVSSPSV 76 Query: 333 YPEEYPHGTIIS 344 T S Sbjct: 77 SVPPPGSITRDS 88 >gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]. Length = 389 Score = 28.7 bits (64), Expect = 3.4 Identities = 10/22 (45%), Positives = 17/22 (77%) Query: 1 MRVLLIGSGGREHALAWKIAQS 22 M++L+IG+GG +A K+AQ+ Sbjct: 2 MKILVIGAGGVGSVVAHKLAQN 23 >gnl|CDD|34640 COG5035, CDC50, Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]. Length = 372 Score = 28.1 bits (62), Expect = 4.4 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 9/60 (15%) Query: 296 ESDILEILNSCVHGNLHNTHINW--------KAEYALTVVVATKGYPEEYPHGTIISKIP 347 S + I ++ + NL I W K +Y + +V + + YP G IP Sbjct: 203 SSLLTGIEDTSNY-NLTTKGIAWESDRHRYKKTKYNASDIVPPPNWAKMYPDGYTDDNIP 261 >gnl|CDD|145616 pfam02571, CbiJ, Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyses the reaction: precorrin-6Y + NADP(+) <=> precorrin-6X + NADPH. CbiJ and CobK both catalyse the reduction of macocycle in the colbalmin biosynthesis pathway. Length = 246 Score = 27.9 bits (63), Expect = 6.1 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDI---QNHSAIIHF 57 MR+L++G ALA +A + ++S + S+ G + + + + + + Sbjct: 1 MRILILGGTTEARALAAALAAAGVVSVVTSLAGRTAAPRL-PPLPVRVGGFGGADGLAAY 59 Query: 58 CQEKHIDLVV 67 +E+ ID V+ Sbjct: 60 LREEGIDAVI 69 >gnl|CDD|30086 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.. Length = 352 Score = 27.5 bits (61), Expect = 6.7 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 24/116 (20%) Query: 130 KQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSA----IDRCF----QQI---NSTV- 177 + + KS +VV+ G + K ++V+ + S D+ F QI + V Sbjct: 15 SRERKEKS-SVVVEVSG--SSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVS 71 Query: 178 -IIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGM 232 I++E L G+ + FA T +T +GD N G SP G+ Sbjct: 72 PILDEVLMGYNCTIFAYGQTGTGKTYTM--------EGDRTDNKGSTWELSPHAGI 119 >gnl|CDD|145740 pfam02745, MCR_alpha_N, Methyl-coenzyme M reductase alpha subunit, N-terminal domain. Methyl-coenzyme M reductase (MCR) is the enzyme responsible for microbial formation of methane. It is a hexamer composed of 2 alpha (this family), 2 beta (pfam02241), and 2 gamma (pfam02240) subunits with two identical nickel porphinoid active sites. The N-terminal domain has a ferredoxin-like fold. Length = 267 Score = 27.5 bits (61), Expect = 7.5 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 12/94 (12%) Query: 87 FKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVK-AD 145 F FG +++ + + AKK K GIP F +P Q K MP V D Sbjct: 24 FYRFGGWKQSERKKEFVEAAKKIAEKRGIP------FYNPDIGVPLGQRKLMPYQVSGTD 77 Query: 146 GLCAGKGVVVAATVDEATSAIDRCFQQINSTVII 179 G + V+ A A+ + + I TVI+ Sbjct: 78 AFVEGDDLHF---VNNA--AMQQMWDDIRRTVIV 106 >gnl|CDD|48179 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.. Length = 265 Score = 27.4 bits (61), Expect = 8.6 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%) Query: 128 KAKQYVQN-----KSMPIVVKADGLCAGKGVV 154 +AKQ + K +PI++ D AG+GVV Sbjct: 127 RAKQDYRGDGERDKVLPILIHGDAAFAGQGVV 158 >gnl|CDD|31945 COG1759, COG1759, ATP-utilizing enzymes of ATP-grasp superfamily (probably carboligases) [General function prediction only]. Length = 361 Score = 27.1 bits (60), Expect = 9.1 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%) Query: 139 PIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINST------VIIEEYLEG--FEVSF 190 P++VK G G+G +A++ +E +R ++ T IEEY+ G F + Sbjct: 152 PVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVGAPFYFHY 211 Query: 191 F 191 F Sbjct: 212 F 212 >gnl|CDD|32819 COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 286 Score = 27.2 bits (60), Expect = 9.6 Identities = 8/32 (25%), Positives = 13/32 (40%) Query: 264 FAGLMITEQGPYLIEYNVRFGDPECQAMMMRL 295 + GP + + +GD EC M+ L Sbjct: 196 SGNCAFGKDGPVIFDPACYWGDRECDLAMLEL 227 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.135 0.404 Gapped Lambda K H 0.267 0.0877 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,143,599 Number of extensions: 268592 Number of successful extensions: 663 Number of sequences better than 10.0: 1 Number of HSP's gapped: 642 Number of HSP's successfully gapped: 32 Length of query: 424 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 328 Effective length of database: 4,189,273 Effective search space: 1374081544 Effective search space used: 1374081544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.2 bits)