RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine
ligase [Candidatus Liberibacter asiaticus str. psy62]
(424 letters)
>gnl|CDD|30500 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide
transport and metabolism].
Length = 428
Score = 546 bits (1409), Expect = e-156
Identities = 215/425 (50%), Positives = 290/425 (68%), Gaps = 9/425 (2%)
Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDI-QNHSAIIHFCQ 59
M+VL+IGSGGREHALAWK+AQSPL+ ++ PGNPG A A V I+I +H A++ F +
Sbjct: 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTALEAYLVNIEIDTDHEALVAFAK 60
Query: 60 EKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTAT 119
EK++DLVVVGPE PLV G+ DAL AAG VFGP++ AA+LE SK+FAK F KYGIPTA
Sbjct: 61 EKNVDLVVVGPEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAE 120
Query: 120 YQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQIN----- 174
Y+ F+DP +AK Y+ K PIVVKADGL AGKGV+VA T++EA +A+D +
Sbjct: 121 YEVFTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAG 180
Query: 175 STVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQ 234
+ V+IEE+L+G E S A DGKT IP TA+DHKR +DGD GPNTGGMGA SPA ++
Sbjct: 181 ARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITD 240
Query: 235 ELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMR 294
E+ +++I+ PT+EGM KE PF+GVL+AGLM+T GP +IE+N RFGDPE Q ++
Sbjct: 241 EVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNARFGDPETQVVLPL 300
Query: 295 LESDILEILNSCVHGNLHNTHIN-WKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGT- 352
LESD++E+L + V G L I W A+ VV+A +GYP + G +I+ +
Sbjct: 301 LESDLVELLLAAVDGKLDEVEILFWDKGAAVGVVLAAEGYPGDPEKGDVITGDEEAEEEG 360
Query: 353 TQLFHAGTAIVNN-NLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411
++FHAG + + L +GGRVL+ G T+ E++E AY +E I + ++R+DIG
Sbjct: 361 AKVFHAGVKLDDGGQLVTSGGRVLAVVGTGDTLEEAQEKAYEALEKIHFDGLFYRKDIGS 420
Query: 412 QKKER 416
+ ER
Sbjct: 421 RALER 425
>gnl|CDD|35458 KOG0237, KOG0237, KOG0237, Glycinamide ribonucleotide synthetase
(GARS)/Aminoimidazole ribonucleotide synthetase (AIRS)
[Nucleotide transport and metabolism].
Length = 788
Score = 484 bits (1247), Expect = e-137
Identities = 203/421 (48%), Positives = 287/421 (68%), Gaps = 11/421 (2%)
Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQC----VAIDIQNHSAIIH 56
+ VL+IGSGGREHALAWK+ QSP + +++ PGN G A + I + + A+
Sbjct: 3 VNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALAS 62
Query: 57 FCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP 116
FC+E +I+LVVVGPELPLV G++D L +AG FGPS++AA+LE+SK+F+K F ++ IP
Sbjct: 63 FCKEHNINLVVVGPELPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIP 122
Query: 117 TATYQHFSDPMKAKQYVQNKSMP-IVVKADGLCAGKGVVVAATVDEATSAID-----RCF 170
TA Y+ F+DP +AK ++Q+ + +V+KADGL AGKGV+VA + +EA A+D + F
Sbjct: 123 TAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVF 182
Query: 171 QQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPAL 230
TV+IEE LEG EVSF A DG + P A+DHKR+ DGD GPNTGGMGA +PA
Sbjct: 183 GSAGKTVVIEELLEGEEVSFLAFTDGYSVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAP 242
Query: 231 GMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQA 290
S +L TV II PT++GM +E P+ GVLFAGLM+T+ GP ++E+NVRFGDPE Q
Sbjct: 243 VASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDGPKVLEFNVRFGDPETQV 302
Query: 291 MMMRLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQ-N 349
++ LESD+ E++ +C +G L I W + A+TVV+A+ GYP Y G+II+ +P+ +
Sbjct: 303 LLPLLESDLAEVILACCNGRLDTVDIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPEAD 362
Query: 350 TGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDI 409
T++FHAGT++ ++N+ NGGRVLS TA G + + E AY V+ I + ++R+DI
Sbjct: 363 RPGTRVFHAGTSLDSSNVVTNGGRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDI 422
Query: 410 G 410
Sbjct: 423 A 423
>gnl|CDD|110097 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp
(A) domain. Phosphoribosylglycinamide synthetase
catalyses the second step in the de novo biosynthesis of
purine. The reaction catalysed by
Phosphoribosylglycinamide synthetase is the ATP-
dependent addition of 5-phosphoribosylamine to glycine
to form 5'phosphoribosylglycinamide. This domain is
related to the ATP-grasp domain of biotin
carboxylase/carbamoyl phosphate synthetase (see
pfam02786).
Length = 193
Score = 284 bits (730), Expect = 3e-77
Identities = 101/193 (52%), Positives = 134/193 (69%), Gaps = 5/193 (2%)
Query: 101 SSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVD 160
SKSFAK F ++GIPTA Y+ F+DP +AK Y++ P VVKADGL AGKGV+VA +
Sbjct: 1 GSKSFAKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAMDNE 60
Query: 161 EATSAIDRCFQQ-----INSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGD 215
EA A+D +Q V+IEE+LEG EVS A DGKT P A+DHKR+ +GD
Sbjct: 61 EAIKAVDEILEQKKFGEAGEPVVIEEFLEGEEVSVLAFVDGKTVKPLPPAQDHKRLGEGD 120
Query: 216 IGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPY 275
GPNTGGMGA SPA ++ EL + + I+ PT++G++KE P++GVL+AGLM+T+ GP
Sbjct: 121 TGPNTGGMGAYSPAPVLTPELLERIKETIVEPTVDGLRKEGIPYKGVLYAGLMLTKDGPK 180
Query: 276 LIEYNVRFGDPEC 288
++E+N RFGDPE
Sbjct: 181 VLEFNCRFGDPET 193
>gnl|CDD|145810 pfam02844, GARS_N, Phosphoribosylglycinamide synthetase, N domain.
Phosphoribosylglycinamide synthetase catalyses the
second step in the de novo biosynthesis of purine. The
reaction catalysed by Phosphoribosylglycinamide
synthetase is the ATP- dependent addition of
5-phosphoribosylamine to glycine to form
5'phosphoribosylglycinamide. This domain is related to
the N-terminal domain of biotin carboxylase/carbamoyl
phosphate synthetase (see pfam00289).
Length = 99
Score = 171 bits (437), Expect = 3e-43
Identities = 62/99 (62%), Positives = 78/99 (78%)
Query: 2 RVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEK 61
+VL++GSGGREHALAWK+AQSP + +++ PGNPG AQ A+ V IDI + A+ F +E+
Sbjct: 1 KVLVVGSGGREHALAWKLAQSPRVEKVYVAPGNPGTAQLAKNVNIDITDFEALADFAKEE 60
Query: 62 HIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLE 100
+IDLVVVGPE PLV GI DAL AAG VFGPS+ AA+LE
Sbjct: 61 NIDLVVVGPEAPLVAGIVDALRAAGIPVFGPSKAAARLE 99
>gnl|CDD|145809 pfam02843, GARS_C, Phosphoribosylglycinamide synthetase, C domain.
Phosphoribosylglycinamide synthetase catalyses the
second step in the de novo biosynthesis of purine. The
reaction catalysed by Phosphoribosylglycinamide
synthetase is the ATP- dependent addition of
5-phosphoribosylamine to glycine to form
5'phosphoribosylglycinamide. This domain is related to
the C-terminal domain of biotin carboxylase/carbamoyl
phosphate synthetase (see pfam02787).
Length = 92
Score = 112 bits (283), Expect = 2e-25
Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 322 YALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALG 381
A+ VV+A+KGYPE Y G I+ + ++ G +FHAGTA+ + L NGGRVL+ ALG
Sbjct: 1 AAVGVVLASKGYPESYEKGIEITGLEEDEGV-LVFHAGTALEDGKLVTNGGRVLAVVALG 59
Query: 382 KTITESRELAYHMVENIDWKHGYWREDIGLQ 412
T+ E+RE AY +E ID+ ++R+DIG +
Sbjct: 60 DTLEEAREKAYAALEKIDFPGLFYRKDIGTK 90
>gnl|CDD|30377 COG0027, PurT, Formate-dependent phosphoribosylglycinamide
formyltransferase (GAR transformylase) [Nucleotide
transport and metabolism].
Length = 394
Score = 58.0 bits (140), Expect = 5e-09
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 19/225 (8%)
Query: 2 RVLLIGSG--GREHALAWKIAQSPLLSELWSI---PGNPGIAQHAQCVAIDIQNHSAIIH 56
+V+L+GSG G+E A I L E+ ++ P + + ID+ + A+
Sbjct: 14 KVMLLGSGELGKEVA----IEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRA 69
Query: 57 FCQEKHIDLVVVGPELPLVNGIS-DALNAAGFKVFGPSQRAAKLESSKSFAKKFCT-KYG 114
+ + D +V PE+ + + L G+ V P+ RA KL ++ ++ + G
Sbjct: 70 VVEREKPDYIV--PEIEAIATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELG 126
Query: 115 IPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ-- 172
+PT+ Y+ + + V+ P VVK +GKG V + ++ A + Q
Sbjct: 127 LPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGR 186
Query: 173 -INSTVIIEEYLE-GFEVSFFALCDGKTAIPFTTARDHKRIHDGD 215
+ VI+EE+++ FE++ + F H++ DGD
Sbjct: 187 GGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPIGHRQE-DGD 230
>gnl|CDD|30788 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 57.6 bits (139), Expect = 7e-09
Identities = 53/246 (21%), Positives = 87/246 (35%), Gaps = 20/246 (8%)
Query: 48 IQNHSAIIHFCQEKHIDLVVVGPE-LPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFA 106
N AII +E D + G L ++A AG GPS A + K A
Sbjct: 60 YLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITA 119
Query: 107 KKFCTKYGIPTATY--QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATS 164
++ K G+P +D +A + P++VKA G+G+ V +E +
Sbjct: 120 RRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEA 179
Query: 165 AIDRCFQQ-----INSTVIIEEYLEGFE-VSFFALCDGKTAIPFTTARDHKRIHDGDIGP 218
A + + N V +E+++EG + L DG + RD I
Sbjct: 180 AFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCS------IQR 233
Query: 219 NTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIE 278
+ +P+ +++EL ++ I K L + Y IE
Sbjct: 234 RHQKVIEEAPSPLLTEEL-----REKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIE 288
Query: 279 YNVRFG 284
N R
Sbjct: 289 MNTRLQ 294
>gnl|CDD|145680 pfam02655, ATP-grasp_3, ATP-grasp domain. No functional
information or experimental verification of function is
known in this family. This family appears to be an
ATP-grasp domain (Pers. obs. A Bateman).
Length = 160
Score = 51.2 bits (123), Expect = 6e-07
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 26/149 (17%)
Query: 139 PIVVK-ADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGK 197
+VK DG C G+GV E I+ II+E++EG +S L DG+
Sbjct: 33 KYIVKPRDG-CGGEGVRFVENGREDEEFIENV--------IIQEFIEGEPLSVSLLSDGE 83
Query: 198 TAIPFTTARDHKRIHDGDIGPNTGGMGACSPALG-MSQELYSTVIQKI-ILPTIEGMQKE 255
A+P + R + G G + +P+ + +EL + + LP + G
Sbjct: 84 KALPLSVNRQLI-DNAGSGFVYAGNL---TPSRTELKEELEELAEEVVEALPGLRGY--- 136
Query: 256 QNPFQGVLFAGLMITEQGPYLIEYNVRFG 284
GV L++T+ GPY+IE N R
Sbjct: 137 ----VGV---DLVLTDNGPYVIEVNPRIT 158
>gnl|CDD|30806 COG0458, CarB, Carbamoylphosphate synthase large subunit (split
gene in MJ) [Amino acid transport and metabolism /
Nucleotide transport and metabolism].
Length = 400
Score = 50.3 bits (120), Expect = 1e-06
Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 14/177 (7%)
Query: 30 SIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVV--VGPELPLVNGI----SDALN 83
+I +P +A I + + +++ D ++ +G + L + L
Sbjct: 41 TIMTDPELADKVYIEPITKE---PVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLE 97
Query: 84 AAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVK 143
G +V G A ++ K K+ + GIP + S +A + P++VK
Sbjct: 98 KYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVPSRIAHS-VEEADEIADEIGYPVIVK 156
Query: 144 -ADGLCAGKGVVVAATVDEATSAIDRCFQQINST-VIIEEYLEGF-EVSFFALCDGK 197
+ GL G G +A +E I+ + V+IEE + G+ E + + DGK
Sbjct: 157 PSFGL-GGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGK 212
>gnl|CDD|31374 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp
enzymes [Cell envelope biogenesis, outer membrane].
Length = 317
Score = 47.6 bits (113), Expect = 6e-06
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 82 LNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY----QHFSDPMKAKQYVQNKS 137
L G G A+ K K+ G+P A Y + + ++ +
Sbjct: 83 LELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLG 142
Query: 138 MPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEV 188
P+ VK + G + SA++ F+ + V+ E+ + G E+
Sbjct: 143 FPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY-DRDVLREQGITGREI 192
>gnl|CDD|34383 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 41.4 bits (97), Expect = 5e-04
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQH--FSDPMKAKQYVQNKS 137
A+ AG GPS A + K AKK + G+PT H D + +
Sbjct: 93 QAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIG 152
Query: 138 MPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINS-----TVIIEEYLE 184
P+++KA GKG+ V T +E A++ ++ + V IE+YL+
Sbjct: 153 YPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLD 204
>gnl|CDD|35590 KOG0369, KOG0369, KOG0369, Pyruvate carboxylase [Energy production
and conversion].
Length = 1176
Score = 40.3 bits (94), Expect = 9e-04
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 54 IIHFCQEKHIDLVVVGPELPLVNG-ISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTK 112
II ++ ++D V G + A+ AG + GPS K A+ +
Sbjct: 98 IISIAKKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIE 157
Query: 113 YGIPT--ATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCF 170
G+P T + +A ++V+ +P+++KA G+G+ V + ++ A R +
Sbjct: 158 AGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAY 217
Query: 171 QQI-----NSTVIIEEYLE 184
+ N T+ +E++LE
Sbjct: 218 SEALAAFGNGTLFVEKFLE 236
>gnl|CDD|30394 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 39.8 bits (93), Expect = 0.001
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 106 AKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSM-PIVVKADGLCAGKG----VVVAATVD 160
AK+ KYGIP + P +A++ + P+VVKA G+G V +A + +
Sbjct: 8 AKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPE 67
Query: 161 EATSAIDRCFQQINSTVIIEEYLEGFEV 188
EA A + + T I E + V
Sbjct: 68 EAKEAAEEILGKNYQTDIKGEPVNKVLV 95
>gnl|CDD|30376 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR
synthetase) [Nucleotide transport and metabolism].
Length = 375
Score = 39.4 bits (92), Expect = 0.002
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Query: 92 PSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKAD-GLCAG 150
PS A ++ + K+F K G+P A +Q + + P V+K G G
Sbjct: 89 PSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGYDG 148
Query: 151 KGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE-GFEVSFFA--LCDGKTAI 200
KG + + ++EE++ E+S DG+ A
Sbjct: 149 KGQWRIRSDADLELRAA--GLAEGGVPVLEEFVPFEREISVIVARSNDGEVAF 199
>gnl|CDD|30538 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 38.4 bits (89), Expect = 0.003
Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 27/225 (12%)
Query: 78 ISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYV-QNK 136
G V Q + + +K + + K GIP DP +A ++V ++
Sbjct: 96 FLRLAERKGVPVINDPQ-SIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHL 154
Query: 137 SMPIVVKADGLCAGKGVVVAATVD-EATSAIDRCFQQINSTVIIEEYLE--GFEVSFFAL 193
P+V+K G+GV + D E S ++ Q+ +I++EY+ + +
Sbjct: 155 GFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLV 214
Query: 194 CDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQ 253
G+ + AR GD N G P + E +
Sbjct: 215 GGGEVVAIYALAR---IPASGDFRSNLARGGRAEP--------------CELTEEEEELA 257
Query: 254 KEQNPFQGVLFAGLMI--TEQGPYLIEYNVRFGDPECQAMMMRLE 296
+ P G+ G+ I + G Y+ E NV P + + R+
Sbjct: 258 VKAAPALGLGLVGVDIIEDKDGLYVTEVNVS---PTGKGEIERVT 299
>gnl|CDD|31240 COG1038, PycA, Pyruvate carboxylase [Energy production and
conversion].
Length = 1149
Score = 37.5 bits (87), Expect = 0.006
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNK 136
+ A AG GP + K A+ K G+P T +A ++ +
Sbjct: 98 ARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEY 157
Query: 137 SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEG 185
P+++KA G+G+ V + + A +R + N V +E+ +E
Sbjct: 158 GYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVEN 211
>gnl|CDD|32006 COG1821, COG1821, Predicted ATP-utilizing enzyme (ATP-grasp
superfamily) [General function prediction only].
Length = 307
Score = 35.7 bits (82), Expect = 0.022
Identities = 44/202 (21%), Positives = 75/202 (37%), Gaps = 45/202 (22%)
Query: 88 KVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP---IVVKA 144
+ G S RA ++ + K TY+ D +K + P ++ A
Sbjct: 100 ENLGCSPRAIRVAADKRL-------------TYKALRDAVKQPPTREWAEEPKKYVIKPA 146
Query: 145 DGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTT 204
DG C G+G+ R F I I +E++EG +S +L G+ +P +
Sbjct: 147 DG-CGGEGI-----------LFGRDFPDI---EIAQEFIEGEHLSV-SLSVGEKVLPLSV 190
Query: 205 ARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLF 264
R ++ N G + +E + I+ + I G+ N + GV
Sbjct: 191 NRQFIIFAGSELVYNGGRTPIDHE---LKREAFEEAIRAV--ECIPGL----NGYVGVD- 240
Query: 265 AGLMITEQGPYLIEYNVRFGDP 286
++ PY+IE N R P
Sbjct: 241 ---LVLSDEPYVIEINPRPTTP 259
>gnl|CDD|35459 KOG0238, KOG0238, KOG0238, 3-Methylcrotonyl-CoA carboxylase,
biotin-containing subunit/Propionyl-CoA carboxylase,
alpha chain/Acetyl-CoA carboxylase, biotin carboxylase
subunit [Lipid transport and metabolism, Amino acid
transport and metabolism].
Length = 670
Score = 33.4 bits (76), Expect = 0.11
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQH--FSDPMKAKQYVQNK 136
++ AG GP A + KS +K+ G+P H +AK+ +
Sbjct: 88 AELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREI 147
Query: 137 SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLE 184
P+++KA GKG+ +A + +E ++ Q+ + +++E++++
Sbjct: 148 GYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID 200
>gnl|CDD|32760 COG2937, PlsB, Glycerol-3-phosphate O-acyltransferase [Lipid
metabolism].
Length = 810
Score = 31.1 bits (70), Expect = 0.70
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 20/100 (20%)
Query: 8 SGGREHALAWKIAQ----------SPLLSELWSIPGNPGIA----QHAQCVAIDIQNHSA 53
+ LA +IA +LS W N Q+A+ + + H
Sbjct: 243 AQKMADELATEIAADFSYELIRVLDRILSRGW----NRLYQGDEVQNAERRRLALDGHEI 298
Query: 54 IIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKV-FGP 92
+ C HID +++ + NG+ AAG + F P
Sbjct: 299 VYVPCHRSHIDYLLL-SYVLYHNGLVPPHIAAGINLNFWP 337
>gnl|CDD|145401 pfam02222, ATP-grasp, ATP-grasp domain. This family does not
contain all known ATP-grasp domain members. This family
includes a diverse set of enzymes that possess
ATP-dependent carboxylate-amine ligase activity.
Length = 171
Score = 29.9 bits (68), Expect = 1.3
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 112 KYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKA-----DGLCAGKGVVVAATVDEATSAI 166
K G+PT + + + Q P V+KA D GKG V + + A
Sbjct: 3 KLGLPTPRFMAAESLEELIEAGQELGYPCVLKARRGGYD----GKGQYVVRSEADIPQAW 58
Query: 167 DRCFQQINSTVIIEEY 182
+ VI+EE+
Sbjct: 59 EELG---GGPVIVEEF 71
>gnl|CDD|30175 cd01988, Na_H_Antiporter_C, The C-terminal domain of a subfamily of
Na+ /H+ antiporter existed in bacteria and archea .
Na+/H+ exchange proteins eject protons from cells,
effectively eliminating excess acid from actively
metabolising cells. Na+ /H+ exchange activity is also
crucial for the regulation of cell volume, and for the
reabsorption of NaCl across renal, intestinal, and other
epithelia. These antiports exchange Na+ for H+ in an
electroneutral manner, and this activity is carried out
by a family of Na+ /H+ exchangers, or NHEs, which are
known to be present in both prokaryotic and eukaryotic
cells. These exchangers are highly-regulated
(glyco)phosphoproteins, which, based on their primary
structure, appear to contain 10-12 membrane-spanning
regions (M) at the N-terminus and a large cytoplasmic
region at the C-terminus. The transmembrane regions
M3-M12 share identity wit h other members of the family.
The M6 and M7 regions are highly conserved. Thus, this
is thought to be the region that is involved in the
transport of sodium and hydrogen ions. The cytoplasmic
region or C-terminal has homology with a family
universal stress protein.Usp is a small cytoplasmic
bacterial protein whose expression is enhanced when the
cell is exposed to stress agents. Usp enhances the rate
of cell survival during prolonged exposure to such
conditions, and may provide a general "stress endurance"
activity..
Length = 132
Score = 29.8 bits (67), Expect = 1.3
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 24 LLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQEKHIDLVVVG 69
LL + I + G+ H + ID S I+ +E+ DL+++G
Sbjct: 57 LLRQAERIAASLGVPVHTI-IRIDHDIASGILRTAKERQADLIIMG 101
>gnl|CDD|38253 KOG3043, KOG3043, KOG3043, Predicted hydrolase related to
dienelactone hydrolase [General function prediction
only].
Length = 242
Score = 29.5 bits (66), Expect = 1.9
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 67 VVGPELPLVNGISDALNAAGFKVFGPS---QRAAKLESSKSFAKKFCTKYGIPTATYQHF 123
V G + P +D + G+ V P KS ++ + P + +
Sbjct: 48 VFGFQFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPP----KIW 103
Query: 124 SDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDE 161
D ++++N + G C G VVV + +
Sbjct: 104 KDITAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKD 141
>gnl|CDD|163597 pfam00100, Zona_pellucida, Zona pellucida-like domain.
Length = 259
Score = 28.7 bits (64), Expect = 2.8
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 274 PYLIEYNVRFGDPECQAMMMRLESDILEI-LNSCVHGNLHNTHINWKAEYALTVVVATKG 332
P L ++ DP C+ + I + L+SC G + + Y +V +
Sbjct: 19 PGLYLSSLHLRDPSCRPVETNDTFAIFQFPLSSC--GTTRSRTEGDRIVYENELVSSPSV 76
Query: 333 YPEEYPHGTIIS 344
T S
Sbjct: 77 SVPPPGSITRDS 88
>gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism].
Length = 389
Score = 28.7 bits (64), Expect = 3.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 1 MRVLLIGSGGREHALAWKIAQS 22
M++L+IG+GG +A K+AQ+
Sbjct: 2 MKILVIGAGGVGSVVAHKLAQN 23
>gnl|CDD|34640 COG5035, CDC50, Cell cycle control protein [Cell division and
chromosome partitioning / Transcription / Signal
transduction mechanisms].
Length = 372
Score = 28.1 bits (62), Expect = 4.4
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 296 ESDILEILNSCVHGNLHNTHINW--------KAEYALTVVVATKGYPEEYPHGTIISKIP 347
S + I ++ + NL I W K +Y + +V + + YP G IP
Sbjct: 203 SSLLTGIEDTSNY-NLTTKGIAWESDRHRYKKTKYNASDIVPPPNWAKMYPDGYTDDNIP 261
>gnl|CDD|145616 pfam02571, CbiJ, Precorrin-6x reductase CbiJ/CobK. This family
consists of Precorrin-6x reductase EC:1.3.1.54. This
enzyme catalyses the reaction: precorrin-6Y + NADP(+)
<=> precorrin-6X + NADPH. CbiJ and CobK both catalyse
the reduction of macocycle in the colbalmin
biosynthesis pathway.
Length = 246
Score = 27.9 bits (63), Expect = 6.1
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDI---QNHSAIIHF 57
MR+L++G ALA +A + ++S + S+ G + + + + + +
Sbjct: 1 MRILILGGTTEARALAAALAAAGVVSVVTSLAGRTAAPRL-PPLPVRVGGFGGADGLAAY 59
Query: 58 CQEKHIDLVV 67
+E+ ID V+
Sbjct: 60 LREEGIDAVI 69
>gnl|CDD|30086 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward..
Length = 352
Score = 27.5 bits (61), Expect = 6.7
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 24/116 (20%)
Query: 130 KQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSA----IDRCF----QQI---NSTV- 177
+ + KS +VV+ G + K ++V+ + S D+ F QI + V
Sbjct: 15 SRERKEKS-SVVVEVSG--SSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVS 71
Query: 178 -IIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGM 232
I++E L G+ + FA T +T +GD N G SP G+
Sbjct: 72 PILDEVLMGYNCTIFAYGQTGTGKTYTM--------EGDRTDNKGSTWELSPHAGI 119
>gnl|CDD|145740 pfam02745, MCR_alpha_N, Methyl-coenzyme M reductase alpha subunit,
N-terminal domain. Methyl-coenzyme M reductase (MCR) is
the enzyme responsible for microbial formation of
methane. It is a hexamer composed of 2 alpha (this
family), 2 beta (pfam02241), and 2 gamma (pfam02240)
subunits with two identical nickel porphinoid active
sites. The N-terminal domain has a ferredoxin-like fold.
Length = 267
Score = 27.5 bits (61), Expect = 7.5
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 87 FKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVK-AD 145
F FG +++ + + AKK K GIP F +P Q K MP V D
Sbjct: 24 FYRFGGWKQSERKKEFVEAAKKIAEKRGIP------FYNPDIGVPLGQRKLMPYQVSGTD 77
Query: 146 GLCAGKGVVVAATVDEATSAIDRCFQQINSTVII 179
G + V+ A A+ + + I TVI+
Sbjct: 78 AFVEGDDLHF---VNNA--AMQQMWDDIRRTVIV 106
>gnl|CDD|48179 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle..
Length = 265
Score = 27.4 bits (61), Expect = 8.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 128 KAKQYVQN-----KSMPIVVKADGLCAGKGVV 154
+AKQ + K +PI++ D AG+GVV
Sbjct: 127 RAKQDYRGDGERDKVLPILIHGDAAFAGQGVV 158
>gnl|CDD|31945 COG1759, COG1759, ATP-utilizing enzymes of ATP-grasp superfamily
(probably carboligases) [General function prediction
only].
Length = 361
Score = 27.1 bits (60), Expect = 9.1
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 139 PIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINST------VIIEEYLEG--FEVSF 190
P++VK G G+G +A++ +E +R ++ T IEEY+ G F +
Sbjct: 152 PVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVGAPFYFHY 211
Query: 191 F 191
F
Sbjct: 212 F 212
>gnl|CDD|32819 COG3001, COG3001, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 286
Score = 27.2 bits (60), Expect = 9.6
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 264 FAGLMITEQGPYLIEYNVRFGDPECQAMMMRL 295
+ GP + + +GD EC M+ L
Sbjct: 196 SGNCAFGKDGPVIFDPACYWGDRECDLAMLEL 227
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0877 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,143,599
Number of extensions: 268592
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 32
Length of query: 424
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 328
Effective length of database: 4,189,273
Effective search space: 1374081544
Effective search space used: 1374081544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.2 bits)