RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62] (424 letters) >gnl|CDD|179154 PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional. Length = 420 Score = 667 bits (1723), Expect = 0.0 Identities = 212/421 (50%), Positives = 290/421 (68%), Gaps = 6/421 (1%) Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQE 60 M+VL+IGSGGREHALAWK+AQSPL+ +++ PGN G A A+ V ID+ + A++ F +E Sbjct: 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNAGTALLAENVVIDVTDIEALVAFAKE 60 Query: 61 KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY 120 + IDL VVGPE PLV GI DA AAG +FGP++ AA+LE SK+FAK F +YGIPTA Y Sbjct: 61 EGIDLTVVGPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAY 120 Query: 121 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQIN-----S 175 + F+D +A Y+ K PIVVKADGL AGKGVVVA T++EA +A+D + Sbjct: 121 ETFTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGA 180 Query: 176 TVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQE 235 V+IEE+L+G E SFFA DG+ +P TA+DHKR DGD GPNTGGMGA SPA +++E Sbjct: 181 RVVIEEFLDGEEASFFAFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEE 240 Query: 236 LYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRL 295 + V+++II PT++GM E P+ GVL+AGLMIT+ GP +IE+N RFGDPE Q ++ RL Sbjct: 241 VVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDGPKVIEFNARFGDPETQVVLPRL 300 Query: 296 ESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQL 355 +SD++E+L + G L + W A+ VV+A KGYP +Y G +I+ + ++ Sbjct: 301 KSDLVELLLAAADGKLDEVELEWDDRAAVGVVLAAKGYPGDYRKGDVITGLE-AADADKV 359 Query: 356 FHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQKKE 415 FHAGT + + L NGGRVL TALG T+ E+++ AY ++ ID+ G++R DIG + + Sbjct: 360 FHAGTKLEDGKLVTNGGRVLCVTALGDTLEEAQKRAYAALDKIDFDGGFYRRDIGYRALK 419 Query: 416 R 416 R Sbjct: 420 R 420 >gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase. Length = 434 Score = 531 bits (1370), Expect = e-151 Identities = 215/421 (51%), Positives = 279/421 (66%), Gaps = 14/421 (3%) Query: 4 LLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQH--AQCVA-IDIQNHSAIIHFCQE 60 L+IG GGREHAL + + +SP ++ PGN GIA A CV +DI + +A+I FC++ Sbjct: 1 LVIGGGGREHALCYALQRSPSCDAVFCAPGNAGIATSGDATCVPDLDISDSAAVISFCRK 60 Query: 61 KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY 120 + LVVVGPE PLV G++D L AG FGPS AA LE SK+F K C KY IPTA Y Sbjct: 61 WGVGLVVVGPEAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKY 120 Query: 121 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAID-----RCFQQINS 175 + F+DP AK+Y++ + PIVVKADGL AGKGVVVA T++EA A+D F S Sbjct: 121 ETFTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGS 180 Query: 176 TVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQE 235 V++EE+L+G E SFFAL DG+ AIP +A+DHKR+ DGD GPNTGGMGA SPA ++ E Sbjct: 181 EVVVEEFLDGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPE 240 Query: 236 LYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG--PYLIEYNVRFGDPECQAMMM 293 L S V++ II PT++GM E F GVL+AGLMI ++ P L+EYNVRFGDPECQ +MM Sbjct: 241 LESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMM 300 Query: 294 RLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKI---PQNT 350 RLESD+ ++L + G L + W + A+ VV+A+ GYP Y GT+I + Sbjct: 301 RLESDLAQVLLAACKGELSGVSLTWSPDSAMVVVMASNGYPGSYKKGTVIKNLDEAEAVA 360 Query: 351 GTTQLFHAGTAI-VNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDI 409 ++FHAGTA+ + N+ A GGRVL TA GK I E+R AY V+ IDW G++R DI Sbjct: 361 PGVKVFHAGTALDSDGNVVAAGGRVLGVTAKGKDIAEARARAYDAVDQIDWPGGFFRRDI 420 Query: 410 G 410 G Sbjct: 421 G 421 >gnl|CDD|162082 TIGR00877, purD, phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. Length = 423 Score = 527 bits (1359), Expect = e-150 Identities = 212/420 (50%), Positives = 293/420 (69%), Gaps = 10/420 (2%) Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQC--VAIDIQNHSAIIHFC 58 M+VL+IG+GGREHALAWK+AQSPL+ ++ PGN G A+ A+ VAI I + A++ F Sbjct: 1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAISITDIEALVEFA 60 Query: 59 QEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTA 118 ++K IDL V+GPE PLV G+ DAL AG VFGP++ AA+LE SK+FAK F +YGIPTA Sbjct: 61 KKKKIDLAVIGPEAPLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTA 120 Query: 119 TYQHFSDPMKAKQYVQNKSMP-IVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ----I 173 Y+ F+DP +A Y+Q K P IVVKADGL AGKGV+VA T +EA A++ +Q Sbjct: 121 EYEVFTDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDA 180 Query: 174 NSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMS 233 V+IEE+L+G EVS A DGKT IP A+DHKR +GD GPNTGGMGA SPA + Sbjct: 181 GERVVIEEFLDGEEVSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFT 240 Query: 234 QELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMM 293 +E+ + ++I+ PT++GM+KE P++GVL+AGLM+T++GP ++E+N RFGDPE QA++ Sbjct: 241 EEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEGPKVLEFNCRFGDPETQAVLP 300 Query: 294 RLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIP--QNTG 351 L+SD+LE+ + V G L + + A+TVV+A++GYP +Y G I+ P + G Sbjct: 301 LLKSDLLEVCLAAVEGKLDEVELRFDNRAAVTVVLASEGYPGDYRKGDPITGEPLIEAEG 360 Query: 352 TTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGL 411 ++FHAGT N L +GGRVL+ TALGK++ E+RE AY VE I ++ ++R+DIG Sbjct: 361 -VKVFHAGTKQDNGKLVTSGGRVLAVTALGKSLEEARERAYEAVEYIKFEGMFYRKDIGF 419 >gnl|CDD|184327 PRK13789, PRK13789, phosphoribosylamine--glycine ligase; Provisional. Length = 426 Score = 355 bits (912), Expect = 1e-98 Identities = 169/419 (40%), Positives = 250/419 (59%), Gaps = 10/419 (2%) Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVA--IDIQNHSAIIHFC 58 ++VLLIGSGGRE A+A+ + +S LLSEL PGN G A I + S++ F Sbjct: 5 LKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFL 64 Query: 59 QEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTA 118 + DL+VVGPE PLV G +D G FGP A++E SK FAK + IPTA Sbjct: 65 KSNPFDLIVVGPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTA 124 Query: 119 TYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQ-----QI 173 +Y+ F++ + Y++++ +PIV+KADGL AGKGV VA A A+ F+ Q Sbjct: 125 SYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQS 184 Query: 174 NSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMS 233 + V+IEE++EG E S FA+ DG + A+DHKR DGD GPNTGGMGA PA ++ Sbjct: 185 GNQVVIEEFMEGQEASIFAISDGDSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVIT 244 Query: 234 QELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQG-PYLIEYNVRFGDPECQAMM 292 + + V ++I P + +K+ +P++G+L+AGLMI+ +G P ++E+N RFGDPE Q ++ Sbjct: 245 EAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVL 304 Query: 293 MRLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTG- 351 L+ D+LE+L + G + ++ K A VV+A +GYP+ Y I +P+ +G Sbjct: 305 AMLDGDLLELLYAASTGKIKVVNLKLKQGAAAVVVLAAQGYPDSYEKN-IPLNLPETSGQ 363 Query: 352 TTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIG 410 LFHAGT + + ++GGR+L A GK + +S + AY +E I ++R+DIG Sbjct: 364 NVVLFHAGTKKKDGKVFSSGGRILGIVAQGKDLKDSVDQAYSFLEKIQAPKTFYRKDIG 422 >gnl|CDD|184328 PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional. Length = 379 Score = 321 bits (825), Expect = 2e-88 Identities = 148/368 (40%), Positives = 217/368 (58%), Gaps = 9/368 (2%) Query: 46 IDIQNHSAIIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSF 105 I +H AI+ F +++++D VV+GPE PL++G++D L A GFKVFGP+++AA++E SK F Sbjct: 11 ISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLF 70 Query: 106 AKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSA 165 AKK KY IPTA Y+ A Y++N +P+VVK DGL AGKGV++A T++ A SA Sbjct: 71 AKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSA 130 Query: 166 IDRCF-QQINSTVIIEEYLEGFEVSFFALCDGKTAIPF-TTARDHKRIHDGDIGPNTGGM 223 I+ + + TV+ E +LEG E S +G A+PF A+DHKR D D GPNTGGM Sbjct: 131 IEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGM 190 Query: 224 GACSPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRF 283 GA P +S ++ + I P + M E F GVL+ G ++T+ GP +IE+N RF Sbjct: 191 GAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARF 250 Query: 284 GDPECQAMMMRLESDILE-ILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTI 342 GDPE Q ++ R+ESD+++ I++ T WK E + V++A+KGYP+ Y G Sbjct: 251 GDPEAQVLLSRMESDLMQHIIDL---DEGKRTEFKWKNESIVGVMLASKGYPDAYEKGHK 307 Query: 343 ISKIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKH 402 +S N F +G + +GGRV+ A G + +++ AY V I H Sbjct: 308 VSGFDLN---ENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQIQSDH 364 Query: 403 GYWREDIG 410 ++R DI Sbjct: 365 LFYRHDIA 372 >gnl|CDD|180256 PRK05784, PRK05784, phosphoribosylamine--glycine ligase; Provisional. Length = 486 Score = 235 bits (601), Expect = 2e-62 Identities = 138/451 (30%), Positives = 215/451 (47%), Gaps = 50/451 (11%) Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPG--NPGIAQHA-----QCVAIDIQNHSA 53 M+VLL+G G REHALA + +S +++++ NPGI + +I + Sbjct: 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIGNINSPEE 60 Query: 54 IIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKY 113 + +E + DLVV+GPE PL G++D L GF VFG S + A++E SK +A++ KY Sbjct: 61 VKKVAKEVNPDLVVIGPEEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKY 120 Query: 114 GIP-TATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAA--------TVDEA-T 163 IP Y+ F D +A ++++ + +K GKGV V A EA T Sbjct: 121 SIPGRLRYKVFYDVEEAAKFIEYGG-SVAIKPARQAGGKGVKVIADLQAYLSQEKREALT 179 Query: 164 SAIDRCFQQINS------TVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIG 217 +++ + +++EE ++G E + L DG+T IP A+D+ ++ IG Sbjct: 180 KSVNDIKEGSAYYKDVEPKILVEEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIG 239 Query: 218 PNTGGMGACSPALG----MSQELYSTVIQKIILPTIEGMQKEQN-PFQGVLFAGLMITE- 271 P TGGMG+ S +++E Y + +I+ TI+ + KE + GV+ +M+TE Sbjct: 240 PETGGMGSISGPGELLPFINEEEYEEAV-EIVKRTIDAIYKETGERYVGVISGQMMLTEL 298 Query: 272 QGPYLIEYNVRFGDPECQAMMMRLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATK 331 GP +IEY RFGDPE ++ R+ESD E+ G L I + E ++ +A Sbjct: 299 WGPTVIEYYSRFGDPEASNIIPRIESDFGELFELAATGKLSKAKIKFNEEPSVVKAIAPL 358 Query: 332 GYPE--EYPHGTIISKIPQN----TGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTIT 385 GYP + G I + + G +F + L G R L A+GK Sbjct: 359 GYPLSRDLASGRRI-VVDLDKIKEEGCL-VFFGSVELEGGQLITKGSRALEIVAIGKDFE 416 Query: 386 ESRELAYHMVENI------DWKHGYWREDIG 410 E AY +E D K +R DIG Sbjct: 417 E----AYEKLERCISYVSSDTKL-IYRTDIG 442 >gnl|CDD|102357 PRK06395, PRK06395, phosphoribosylamine--glycine ligase; Provisional. Length = 435 Score = 198 bits (504), Expect = 3e-51 Identities = 143/440 (32%), Positives = 225/440 (51%), Gaps = 32/440 (7%) Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPG--NPGIAQHA-QCVAIDIQNHSAIIHF 57 M+V+L+GSGGRE A+A I +S + L+S+ G NP I + + + + D +++ I F Sbjct: 3 MKVMLVGSGGREDAIARAIKRSG--AILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDF 60 Query: 58 CQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIP- 116 + ++D+V VGP+ L + + L G KV P+ AA +E+SK F + ++ IP Sbjct: 61 ALKNNVDIVFVGPDPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPG 120 Query: 117 -TATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAA----TVDEATS-AIDRCF 170 FS+ A+ Y+ + + VK GL GKGV V +VDEA AI+ Sbjct: 121 NINFNACFSEKDAARDYITSMK-DVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIE--I 177 Query: 171 QQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSP-- 228 + V+IE+ + G E S A DGK +D+KR ++GD GPNTGGMG+ S Sbjct: 178 LDRDGVVLIEKKMTGEEFSLQAFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRD 237 Query: 229 -ALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPE 287 +L + + I+ I M+ E NPF+G+++ M T G +IE N RF DPE Sbjct: 238 FSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNGVKVIEINARFADPE 297 Query: 288 CQAMMMRLESDILEILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTI-ISKI 346 ++ L+SD +E L+ GNL+ + + L +V GY E G I I K Sbjct: 298 GINVLYLLKSDFVETLHQIYSGNLNGSIKFERKATVLKYIVPP-GYGENPSPGRIKIDKT 356 Query: 347 PQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVEN-IDWKHG-- 403 ++ + +++A + N++ +G R L+ A G +I E A V++ ++ HG Sbjct: 357 IFDSN-SDVYYASVSGTLNDVKTSGSRSLAIIAKGDSIPE----ASEKVDSDLNAVHGSY 411 Query: 404 YWREDIG----LQKKERNVK 419 Y R DIG ++KK +N K Sbjct: 412 YVRRDIGDSDFIRKKIKNAK 431 >gnl|CDD|183732 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional. Length = 326 Score = 57.6 bits (140), Expect = 6e-09 Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 32/238 (13%) Query: 53 AIIHFCQEKHIDLVVVG--PELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFC 110 ++ C+++ IDL++ PELPL+ D G KV S+ ++ + K +F Sbjct: 60 RLLDICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFL 119 Query: 111 TKYGIPTA-TYQHFSDPMKAKQYVQNK-SMPIVVKADGLCAGKGVVVAATVDEATSAIDR 168 + GIPT +Y S + + P+ VK A GV +E ++ Sbjct: 120 KENGIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEY 179 Query: 169 CFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGM--GAC 226 +II+E++EG E + LCD + R KRI + G Sbjct: 180 -----VPNLIIQEFIEGQEYTVDVLCDLNGEVISIVPR--KRI----------EVRAGET 222 Query: 227 SPALGMSQELYSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFG 284 S + TV + E + + G L +T+ PYL E N RFG Sbjct: 223 SKGV--------TVKDPELFKLAERLAEALGAR-GPLNIQCFVTDGEPYLFEINPRFG 271 >gnl|CDD|181524 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated. Length = 499 Score = 49.2 bits (118), Expect = 2e-06 Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 9/114 (7%) Query: 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNK 136 + A AG GPS + SK AKK K G+P T + D +AK+ + Sbjct: 92 AKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEI 151 Query: 137 SMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI------NSTVIIEEYLE 184 P+++KA G G+ V + +E AI+ Q I +STV IE+YLE Sbjct: 152 GYPVIIKASAGGGGIGMRVVYSEEELEDAIEST-QSIAQSAFGDSTVFIEKYLE 204 >gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639). Length = 380 Score = 47.8 bits (114), Expect = 6e-06 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 25/228 (10%) Query: 2 RVLLIGSG--GREHALAWKIAQSPLLSELWSI---PGNPGIAQHAQCVAIDIQNHSAIIH 56 RVLL+GSG G+E A I L E+ ++ P + + I++ + A+ Sbjct: 1 RVLLLGSGELGKEVA----IEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRA 56 Query: 57 FCQEKHIDLVVVGPELPLVNGIS-DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTK-YG 114 + + D +V PE+ + + L G+ V P+ RA KL ++ ++ + G Sbjct: 57 VIEREKPDYIV--PEIEAIATDALFELEKEGYFVV-PNARATKLTMNREGIRRLAAEELG 113 Query: 115 IPTATYQHFSDPMKA-KQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ- 172 +PT+ Y F+D + ++ V+ P VVK +GKG V ++ A + + Sbjct: 114 LPTSRY-MFADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGA 172 Query: 173 --INSTVIIEEYLE-GFEVSFFALC--DGKTAIPFTTARDHKRIHDGD 215 VI+EE+++ +E++ + DG T F H++I DGD Sbjct: 173 RGGAGRVIVEEFIDFDYEITLLTVRHVDGNTT--FCAPIGHRQI-DGD 217 >gnl|CDD|179427 PRK02471, PRK02471, bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional. Length = 752 Score = 46.5 bits (111), Expect = 1e-05 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 10/102 (9%) Query: 103 KSFAKKFCTKYGIPTATYQHFSDPMKAK---QYVQNKSMPIVVKADGLCAGKGVVV---A 156 K KK + G P F+ +A +K IVVK G G+ + Sbjct: 489 KVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFADK--AIVVKPKSTNFGLGISIFKEP 546 Query: 157 ATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKT 198 A++++ A++ F++ +S+V++EE++ G E FF L DGK Sbjct: 547 ASLEDYEKALEIAFRE-DSSVLVEEFIVGTEYRFFVL-DGKV 586 >gnl|CDD|162248 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model. Length = 315 Score = 44.2 bits (105), Expect = 6e-05 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 7/114 (6%) Query: 82 LNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY------QHFSDPMKAKQYVQN 135 L G G A+ L K K G+PT Y + +D ++ +Q + Sbjct: 85 LELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEP 144 Query: 136 KSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFEVS 189 P++VK + GV + +E +A+D F+ + V++E++++G E+ Sbjct: 145 LGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE-YDEEVLVEQFIKGRELE 197 >gnl|CDD|130502 TIGR01435, glu_cys_lig_rel, glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein. Length = 737 Score = 40.7 bits (95), Expect = 7e-04 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 102 SKSFAKKFCTKYGIPTATYQHFSDPMKAKQ-YVQNKSMPIVVKADGLCAGKGVVV---AA 157 +K KK + G FS A + + ++ IVVK G G+ + Sbjct: 475 NKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGF 534 Query: 158 TVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALCDGKTAI 200 T+++ A++ F + +S+VIIEE+L G E FF L D A+ Sbjct: 535 TLEDFQEALNIAFSE-DSSVIIEEFLPGTEYRFFVLNDKVEAV 576 >gnl|CDD|148851 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF). Length = 201 Score = 39.2 bits (92), Expect = 0.002 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Query: 114 GIPTATYQHFS----DPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRC 169 GIP A + + ++ + P+ VK L + G+ + +E SAI+ Sbjct: 6 GIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEA 65 Query: 170 FQQINSTVIIEEYLEGFEV 188 FQ ++ V+IEE +EG E+ Sbjct: 66 FQY-DNKVLIEEAIEGREI 83 >gnl|CDD|162228 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Length = 352 Score = 38.9 bits (91), Expect = 0.002 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMP 139 + L A G K+F PS A + + K+F K G+P + D + +Q P Sbjct: 77 EKLEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELGFP 135 Query: 140 IVVKA-DGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE-GFEVS 189 +V+KA G G+G + A + I+EE++ E+S Sbjct: 136 VVLKARTGGYDGRGQYRIRNEADLPQAAKELGDR---ECIVEEFVPFERELS 184 >gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. Length = 449 Score = 38.6 bits (90), Expect = 0.003 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 8/119 (6%) Query: 86 GFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQH--FSDPMKAKQYVQNKSMPIVVK 143 GF GPS + +L K A + K G+P D + + + P+++K Sbjct: 99 GFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIK 158 Query: 144 ADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEGF-EVSFFALCDG 196 A G+G+ V DE +I + N V IE+Y+E V L D Sbjct: 159 ATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADK 217 >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis. Length = 1143 Score = 38.3 bits (89), Expect = 0.004 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 8/139 (5%) Query: 54 IIHFCQEKHIDLVVVGPELPLVNG-ISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTK 112 II + +D + G N +DA N AG GP K A+ K Sbjct: 66 IIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIK 125 Query: 113 YGIPT--ATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCF 170 G+P T + + P+++KA G+G+ V + + A R Sbjct: 126 AGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAK 185 Query: 171 QQI-----NSTVIIEEYLE 184 + N V +E+ +E Sbjct: 186 SEAKAAFGNDEVYVEKLIE 204 >gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. Length = 1050 Score = 37.7 bits (88), Expect = 0.006 Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 31/220 (14%) Query: 74 LVNGISDALNAAGFKVFGPSQRAA-KLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQY 132 ++ AL AG + G S + + E + F++ + GIP ++ + +A ++ Sbjct: 641 TPLNLAKALEEAGVPILGTSPESIDRAEDREKFSE-LLDELGIPQPKWKTATSVEEAVEF 699 Query: 133 VQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQ-QINSTVIIEEYLE-GFEVSF 190 P++V+ + G+ + + +E ++ + V+I++YLE EV Sbjct: 700 ASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDV 759 Query: 191 FALCDGKTAIPFTTARDHKR--IHDGDIGPNTGGMGACS-PALGMSQELYSTVIQKIILP 247 A+ DG+ + + +H GD C P Q L + ++ +I Sbjct: 760 DAVSDGEEVLIPGIMEHIEEAGVHSGD--------STCVLPP----QTLSAEIVDRIKDI 807 Query: 248 TIEGMQKEQNPFQGVLFAGLM-----ITEQGPYLIEYNVR 282 + + KE N GLM + + Y+IE N R Sbjct: 808 VRK-IAKELN------VKGLMNIQFAVKDGEVYVIEVNPR 840 >gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional. Length = 809 Score = 36.7 bits (85), Expect = 0.010 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 15/130 (11%) Query: 91 GPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFS------DPMKA-KQYVQNKSMPIVVK 143 GPS + + K K+F + G+P YQ + +P V+ S P+ VK Sbjct: 557 GPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVK 616 Query: 144 ADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLEG---FEVSFFALCDGKTAI 200 L + GV V+E I F ++ V +EE G EVS L DG +A Sbjct: 617 TAHLGSSIGVFEVHNVEELRDKISEAFLY-DTDVFVEESRLGSREIEVSC--LGDGSSA- 672 Query: 201 PFTTARDHKR 210 + A H+R Sbjct: 673 -YVIAGPHER 681 >gnl|CDD|162159 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G. Length = 386 Score = 36.2 bits (84), Expect = 0.015 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 106 AKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSM-PIVVKADGLCAGK----GVVVAATVD 160 AK+ KYGIP + +A++ P+VVKA G+ GV VA + + Sbjct: 8 AKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKE 67 Query: 161 EATSAIDRCF 170 EA +A ++ Sbjct: 68 EARAAAEKLL 77 >gnl|CDD|180352 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed. Length = 372 Score = 35.9 bits (84), Expect = 0.018 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 21/93 (22%) Query: 107 KKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKA-----DGLCAGKGVVVAATVDE 161 K+F K GIP A + + + + +P V+K DG KG V + ++ Sbjct: 105 KQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPAVLKTRRGGYDG----KGQWVIRSAED 160 Query: 162 ATSAIDRCFQQINSTVIIEEYLEGF-----EVS 189 +A + + S I LE F EVS Sbjct: 161 LEAA----WALLGSVPCI---LEEFVPFEREVS 186 >gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated. Length = 478 Score = 35.2 bits (81), Expect = 0.035 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 85 AGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKA-KQYVQNKSMPIV 141 AG GP + +K+ A+ K GIP T + S+ M+ K + + P++ Sbjct: 97 AGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVI 156 Query: 142 VKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLE 184 +KA G G+G+ V ++ +A + C ++ N V +E+Y+ Sbjct: 157 LKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV 204 >gnl|CDD|162031 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). Length = 277 Score = 34.2 bits (79), Expect = 0.057 Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 3/106 (2%) Query: 81 ALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPI 140 L + G V S A K + K G+P P +A + ++ P+ Sbjct: 68 YLESLGVPVINSSD-AILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIGFPV 126 Query: 141 VVKADGLCAGKGVVVAATVDEATSAID--RCFQQINSTVIIEEYLE 184 V+K G+ V +A A + ++ + ++EY++ Sbjct: 127 VLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIK 172 >gnl|CDD|182468 PRK10446, PRK10446, ribosomal protein S6 modification protein; Provisional. Length = 300 Score = 34.1 bits (78), Expect = 0.078 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 139 PIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIEEYLE 184 P+VVK G GVV+A T A S ID F+ +N+ ++++EY++ Sbjct: 137 PLVVKLVEGTQGIGVVLAETRQAAESVID-AFRGLNAHILVQEYIK 181 >gnl|CDD|179356 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed. Length = 333 Score = 33.6 bits (78), Expect = 0.10 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 12/107 (11%) Query: 103 KSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNK----SMPIVVKADGLCAGK--GVVVA 156 K K+ GIP A Y + + + +P+ VK G G+ Sbjct: 124 KILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKLGLPVFVKP--ANLGSSVGISKV 181 Query: 157 ATVDEATSAIDRCFQQINSTVIIEEYLEGFEVSFFALC--DGKTAIP 201 +E +A+D F + + V++E+ ++G E+ A+ D K ++P Sbjct: 182 KNEEELAAALDLAF-EYDRKVLVEQGIKGREIE-CAVLGNDPKASVP 226 >gnl|CDD|179288 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed. Length = 304 Score = 32.4 bits (75), Expect = 0.20 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 103 KSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGK--GVVVAATVD 160 K K G+PT + + + +P+VVK G GV D Sbjct: 99 KLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGLPLVVKP--AREGSSVGVSKVKEED 156 Query: 161 EATSAIDRCFQQINSTVIIEEYLEGFEVS 189 E +A++ F+ + V++E+Y++G E++ Sbjct: 157 ELQAALELAFK-YDDEVLVEKYIKGRELT 184 >gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed. Length = 1068 Score = 32.2 bits (74), Expect = 0.25 Identities = 26/147 (17%), Positives = 63/147 (42%), Gaps = 7/147 (4%) Query: 54 IIHFCQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKY 113 +++ + ++I V+V ++ L AG + G S + + + Sbjct: 622 VLNVAEAENIKGVIVQFGGQTAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDEL 681 Query: 114 GIPTATYQHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI 173 G+P +D +A + + P++++ + G+G+ V DE A++ + Sbjct: 682 GLPHVPGLTATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVY--DEP--ALEAYLAEN 737 Query: 174 NST---VIIEEYLEGFEVSFFALCDGK 197 S ++I+++++G E A+ DG+ Sbjct: 738 ASQLYPILIDQFIDGKEYEVDAISDGE 764 >gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional. Length = 299 Score = 31.7 bits (72), Expect = 0.40 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 16/123 (13%) Query: 102 SKSFAKKFC-TKYGIPTATYQHFSDPMKAKQYVQNK--------SMPIVVKADGLCAGKG 152 S +F+ C K TY+ ++ +V+ K P VVK + G Sbjct: 85 SDAFSSMICFDKL----LTYRFLKGTVEIPDFVEIKEFMKTSPLGYPCVVKPRREGSSIG 140 Query: 153 VVVAATVDEATSAIDRCFQQINSTVIIEEYLEGFE--VSFFALCDGKTAIPFTTARDHKR 210 V + + +E A+ + S VI++EY+ G E VS G +P R +R Sbjct: 141 VFICESDEEFQHALKEDLPRYGS-VIVQEYIPGREMTVSILETEKGFEVLPILELRPKRR 199 Query: 211 IHD 213 +D Sbjct: 200 FYD 202 >gnl|CDD|149489 pfam08442, ATP-grasp_2, ATP-grasp domain. Length = 202 Score = 31.1 bits (71), Expect = 0.57 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 106 AKKFCTKYGIPTATYQHFSDPMKAKQ-YVQNKSMPIVVKADGLCAGK----GVVVAATVD 160 AK+ KYG+P + P +A++ + VVKA L G+ GV +A + + Sbjct: 7 AKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGVKLAKSPE 66 Query: 161 EA 162 EA Sbjct: 67 EA 68 >gnl|CDD|181436 PRK08462, PRK08462, biotin carboxylase; Validated. Length = 445 Score = 30.5 bits (69), Expect = 0.80 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 86 GFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNKSMPIVVK 143 K GPS L S KS AK+ + G+P + +AK+ + P+++K Sbjct: 101 NIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILK 160 Query: 144 ADGLCAGKGVVV 155 A G+G+ V Sbjct: 161 AAAGGGGRGMRV 172 >gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase subunit; Provisional. Length = 467 Score = 30.5 bits (69), Expect = 0.94 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 79 SDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNK 136 ++A+ AAG GP + + K+ A++ + G+PT + + A + Sbjct: 95 AEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARI 154 Query: 137 SMPIVVKADGLCAGKGVVVAATVDE 161 P+++KA G+G+ VA + Sbjct: 155 GYPLMIKAAAGGGGRGIRVAHDAAQ 179 >gnl|CDD|181492 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated. Length = 451 Score = 30.2 bits (69), Expect = 1.1 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 80 DALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNKS 137 + +GF GPS +L K AK K G+P + D +A + Sbjct: 93 EICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIG 152 Query: 138 MPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLE 184 P+++KA G+G+ V T E A + N V +E+YLE Sbjct: 153 YPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE 204 >gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional. Length = 727 Score = 30.1 bits (69), Expect = 1.2 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Query: 139 PIVVKA-DGLCAGKGVVV-AATVDEATSAIDRCFQQINSTVIIEEYLEGFE 187 P+VVK DG G+GV V T +E +A + +S VI+E Y+ G + Sbjct: 251 PVVVKPLDG-NHGRGVTVNITTREEIEAAYAVA-SKESSDVIVERYIPGKD 299 >gnl|CDD|132147 TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. Length = 547 Score = 29.3 bits (66), Expect = 2.1 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Query: 140 IVVK-ADGLCAGKGVVVAAT-VDEATSAIDRCFQQINSTVIIEEYLEGFE 187 +VVK G GKG+ V D+ +AI + +Q V++E Y+ G + Sbjct: 334 VVVKPVRGE-QGKGISVDVRTPDDLEAAIAKA-RQFCDRVLLERYVPGED 381 >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional. Length = 277 Score = 29.2 bits (66), Expect = 2.3 Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 139 PIVVKADGLCAGKGVVVAATVD 160 PI+ DG+CAG G ++A D Sbjct: 115 PIIAAVDGVCAGAGAILAMASD 136 >gnl|CDD|148597 pfam07083, DUF1351, Protein of unknown function (DUF1351). This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown. Length = 220 Score = 28.9 bits (65), Expect = 2.5 Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 16/99 (16%) Query: 75 VNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQ 134 + + D + +G K F Q+ + ++ K + + +YG+ ++ D K Sbjct: 87 IKAVIDLI-DSGIKEFEEKQKELRRDTVKEYLSEKAEEYGLDKRDFEEKYDDYVKKSKWL 145 Query: 135 NKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQI 173 NKS+ + + + I Q++ Sbjct: 146 NKSVSL---------------KKIEESIDTLILSEAQKL 169 >gnl|CDD|184149 PRK13568, hofQ, putative outer membrane porin HofQ; Provisional. Length = 381 Score = 28.5 bits (64), Expect = 3.4 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%) Query: 345 KIPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESR 388 +P T L +A V ++L + G +LS G + R Sbjct: 79 MLPLANLTLTLQYADAEEVADSLQSQRGGLLS--PRGSVTADKR 120 >gnl|CDD|180445 PRK06179, PRK06179, short chain dehydrogenase; Provisional. Length = 270 Score = 28.3 bits (64), Expect = 3.7 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 8/40 (20%) Query: 74 LVNGIS--------DALNAAGFKVFGPSQRAAKLESSKSF 105 LV G S + L AG++VFG S+ A+ Sbjct: 8 LVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGV 47 >gnl|CDD|178653 PLN03106, TCP2, Protein TCP2; Provisional. Length = 447 Score = 28.1 bits (62), Expect = 4.0 Identities = 11/34 (32%), Positives = 14/34 (41%) Query: 336 EYPHGTIISKIPQNTGTTQLFHAGTAIVNNNLTA 369 H + I QN+ T+L G VNNN Sbjct: 229 HAAHHNNNNPISQNSSFTELLTGGIDPVNNNRQW 262 >gnl|CDD|182099 PRK09831, PRK09831, putative acyltransferase; Provisional. Length = 147 Score = 28.0 bits (62), Expect = 5.4 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%) Query: 58 CQEKHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT 117 C E +ID++ V PE G++ AL K S+ +++S + AK F +YG T Sbjct: 70 CIEHYIDMLFVDPEYTR-RGVASAL----LKPLIKSESELTVDASIT-AKPFFERYGFQT 123 Query: 118 ATYQ 121 Q Sbjct: 124 VKQQ 127 >gnl|CDD|183942 PRK13278, purP, 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase; Provisional. Length = 358 Score = 27.9 bits (63), Expect = 5.4 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 6/59 (10%) Query: 139 PIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQ--INST--VIIEEYLEG--FEVSFF 191 P++VK G G+G +A + +E ID+ ++ I II+EY+ G + +F Sbjct: 151 PVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGVPYYFHYF 209 >gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated. Length = 450 Score = 27.7 bits (62), Expect = 5.6 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 7/107 (6%) Query: 85 AGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNKSMPIVV 142 G GPS SK A++ G+P + D +A + P+++ Sbjct: 98 EGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVML 157 Query: 143 KADGLCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLE 184 KA G G+ + T E T A + ++ N + IE+Y+E Sbjct: 158 KASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE 204 >gnl|CDD|184902 PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provisional. Length = 387 Score = 27.5 bits (61), Expect = 6.7 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 93 SQRAAK-LESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPI 140 S+R K E KS K+C K+G PT+ F +Y++N PI Sbjct: 130 SRRIRKGEEYEKSEELKYCEKFGFPTSPESAFMR-RAVIEYLKNILQPI 177 >gnl|CDD|181582 PRK08916, PRK08916, flagellar motor switch protein; Reviewed. Length = 116 Score = 27.4 bits (61), Expect = 6.8 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%) Query: 359 GTAI---VNNNLTANGGRVLSATALGKTITE 386 G AI VNN L A G VL LG T+TE Sbjct: 79 GEAIDIYVNNRLVARGEVVLVEDRLGVTMTE 109 >gnl|CDD|180883 PRK07206, PRK07206, hypothetical protein; Provisional. Length = 416 Score = 26.9 bits (60), Expect = 9.1 Identities = 31/116 (26%), Positives = 43/116 (37%), Gaps = 22/116 (18%) Query: 173 INSTVIIEEYLEGFE--VSFFALCDGKTAIPFTT--ARDHKRIHDGDIGPNTGGMGACSP 228 +N TV+++EYL G E V+F +L DG T R HK G Sbjct: 188 VNETVLVQEYLIGTEYVVNFVSL-DGN---HLVTEIVRYHKT-------SLNSGSTVYD- 235 Query: 229 ALGMSQEL--YSTVIQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVR 282 E YS + ++ + G A +M+T GP LIE R Sbjct: 236 ----YDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIGAR 287 >gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated. Length = 447 Score = 27.0 bits (60), Expect = 9.9 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 88 KVFGPSQRAAKLESSKSFAKKFCTKYGIPT--ATYQHFSDPMKAKQYVQNKSMPIVVKAD 145 GP +L +KS A++ K G+P + + +A + + P++VKA Sbjct: 101 VFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160 Query: 146 GLCAGKGVVVAATVDEATSAIDRCFQQINS-----TVIIEEYLE 184 G+G+ + + +E A + + + ++ IE+++E Sbjct: 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE 204 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.135 0.404 Gapped Lambda K H 0.267 0.0672 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,952,010 Number of extensions: 442938 Number of successful extensions: 888 Number of sequences better than 10.0: 1 Number of HSP's gapped: 847 Number of HSP's successfully gapped: 55 Length of query: 424 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 328 Effective length of database: 3,920,105 Effective search space: 1285794440 Effective search space used: 1285794440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.2 bits)