BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine
ligase [Candidatus Liberibacter asiaticus str. psy62]
         (424 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 424

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/424 (100%), Positives = 424/424 (100%)

Query: 1   MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQE 60
           MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQE
Sbjct: 1   MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQE 60

Query: 61  KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY 120
           KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY
Sbjct: 61  KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY 120

Query: 121 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIE 180
           QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIE
Sbjct: 121 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIE 180

Query: 181 EYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTV 240
           EYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTV
Sbjct: 181 EYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTV 240

Query: 241 IQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDIL 300
           IQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDIL
Sbjct: 241 IQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDIL 300

Query: 301 EILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGT 360
           EILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGT
Sbjct: 301 EILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGT 360

Query: 361 AIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQKKERNVKY 420
           AIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQKKERNVKY
Sbjct: 361 AIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQKKERNVKY 420

Query: 421 RNKS 424
           RNKS
Sbjct: 421 RNKS 424


>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 443

 Score = 46.2 bits (108), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 87  FKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADG 146
            K  GPS    K+   K  AKK   + GIP         P  A    +    P++VKA  
Sbjct: 100 IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA 159

Query: 147 LCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEG---FEVSFF 191
              G+G+ +A + ++ + AID+   +      N  V IE+YLE     EV  F
Sbjct: 160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIF 212


>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 461

 Score = 26.2 bits (56), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 268 MITEQGPYLIEYNVRFGDP 286
           +I E+GP   E N+R GDP
Sbjct: 212 LIHEEGPAQFEINIRHGDP 230


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1246

 Score = 25.8 bits (55), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 61  KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESS 102
           + +D+V    E  +   + DAL +AGF +    +   K+ES+
Sbjct: 122 RFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESA 163


>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 737

 Score = 25.4 bits (54), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 257 NPFQGV------LFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSC 306
           +PF+G        +  ++ T   P  I  N+ FG+PE + +M +    +  I  +C
Sbjct: 464 DPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREAC 519


>gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 419

 Score = 25.0 bits (53), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 3  VLLIGSGGREHALAWKIAQS 22
          VL+IG+GG  H +A K AQ+
Sbjct: 5  VLIIGAGGVAHVVAHKCAQN 24


>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 354

 Score = 23.9 bits (50), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 92  PSQRAAKLESSKSFAKKFCTKYGIPTATY 120
           PS RA ++   + + KKF  + G+ T  +
Sbjct: 91  PSSRAIEISQDRLYEKKFFQESGLTTVDF 119


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 23.5 bits (49), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 346 IPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDW 400
           +   TG+ +    G A+ +  L  N     ++  L   I  +RELA  +   ++W
Sbjct: 42  VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96


>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 23.1 bits (48), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 168 RCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHD 213
           +CF +   T I +E        F  L  G+T +     R+   I D
Sbjct: 230 QCFVKGTDTSIFDEIARQLTPRFLGLLQGRTMVRSANLREKASIGD 275


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,481
Number of Sequences: 1233
Number of extensions: 11242
Number of successful extensions: 36
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 11
length of query: 424
length of database: 328,796
effective HSP length: 76
effective length of query: 348
effective length of database: 235,088
effective search space: 81810624
effective search space used: 81810624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)