BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62] (424 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/424 (100%), Positives = 424/424 (100%) Query: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQE 60 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQE Sbjct: 1 MRVLLIGSGGREHALAWKIAQSPLLSELWSIPGNPGIAQHAQCVAIDIQNHSAIIHFCQE 60 Query: 61 KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY 120 KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY Sbjct: 61 KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATY 120 Query: 121 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIE 180 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIE Sbjct: 121 QHFSDPMKAKQYVQNKSMPIVVKADGLCAGKGVVVAATVDEATSAIDRCFQQINSTVIIE 180 Query: 181 EYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTV 240 EYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTV Sbjct: 181 EYLEGFEVSFFALCDGKTAIPFTTARDHKRIHDGDIGPNTGGMGACSPALGMSQELYSTV 240 Query: 241 IQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDIL 300 IQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDIL Sbjct: 241 IQKIILPTIEGMQKEQNPFQGVLFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDIL 300 Query: 301 EILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGT 360 EILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGT Sbjct: 301 EILNSCVHGNLHNTHINWKAEYALTVVVATKGYPEEYPHGTIISKIPQNTGTTQLFHAGT 360 Query: 361 AIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQKKERNVKY 420 AIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQKKERNVKY Sbjct: 361 AIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDWKHGYWREDIGLQKKERNVKY 420 Query: 421 RNKS 424 RNKS Sbjct: 421 RNKS 424 >gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 443 Score = 46.2 bits (108), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 8/113 (7%) Query: 87 FKVFGPSQRAAKLESSKSFAKKFCTKYGIPTATYQHFSDPMKAKQYVQNKSMPIVVKADG 146 K GPS K+ K AKK + GIP P A + P++VKA Sbjct: 100 IKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHTAMPIAKEIGFPVLVKASA 159 Query: 147 LCAGKGVVVAATVDEATSAIDRCFQQI-----NSTVIIEEYLEG---FEVSFF 191 G+G+ +A + ++ + AID+ + N V IE+YLE EV F Sbjct: 160 GGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHIEVQIF 212 >gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 268 MITEQGPYLIEYNVRFGDP 286 +I E+GP E N+R GDP Sbjct: 212 LIHEEGPAQFEINIRHGDP 230 >gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] Length = 1246 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 22/42 (52%) Query: 61 KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESS 102 + +D+V E + + DAL +AGF + + K+ES+ Sbjct: 122 RFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESA 163 >gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] Length = 737 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 257 NPFQGV------LFAGLMITEQGPYLIEYNVRFGDPECQAMMMRLESDILEILNSC 306 +PF+G + ++ T P I N+ FG+PE + +M + + I +C Sbjct: 464 DPFEGTKQAVAECWRNIIATGAKPLAITDNLNFGNPEKEEIMGQFVHSVKGIREAC 519 >gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter asiaticus str. psy62] Length = 419 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 3 VLLIGSGGREHALAWKIAQS 22 VL+IG+GG H +A K AQ+ Sbjct: 5 VLIIGAGGVAHVVAHKCAQN 24 >gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 23.9 bits (50), Expect = 5.0, Method: Compositional matrix adjust. Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 92 PSQRAAKLESSKSFAKKFCTKYGIPTATY 120 PS RA ++ + + KKF + G+ T + Sbjct: 91 PSSRAIEISQDRLYEKKFFQESGLTTVDF 119 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 23.5 bits (49), Expect = 6.5, Method: Compositional matrix adjust. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 346 IPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDW 400 + TG+ + G A+ + L N ++ L I +RELA + ++W Sbjct: 42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 >gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 23.1 bits (48), Expect = 9.4, Method: Compositional matrix adjust. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 168 RCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHD 213 +CF + T I +E F L G+T + R+ I D Sbjct: 230 QCFVKGTDTSIFDEIARQLTPRFLGLLQGRTMVRSANLREKASIGD 275 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.404 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 275,481 Number of Sequences: 1233 Number of extensions: 11242 Number of successful extensions: 36 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 11 length of query: 424 length of database: 328,796 effective HSP length: 76 effective length of query: 348 effective length of database: 235,088 effective search space: 81810624 effective search space used: 81810624 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)