Query gi|254780207|ref|YP_003064620.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 98
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Mon May 23 12:20:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780207.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1nhp_A NADH peroxidase; oxido 31.3 13 0.00039 18.2 0.3 18 64-81 20-37 (37)
2 >3cu7_A Complement C5; Mg doma 19.5 34 0.001 16.0 0.6 46 1-46 1-49 (122)
3 >1l4t_A Gastrin/cholecystokini 17.9 55 0.0016 14.9 1.3 16 77-92 13-28 (30)
4 >1hzn_A CCK-A receptor, cholec 12.9 86 0.0026 13.8 1.3 14 77-90 16-29 (31)
5 >1s5r_A High mobility group bo 11.6 58 0.0017 14.8 0.0 13 52-64 2-14 (26)
6 >1k8b_A EIF-2-beta, probable t 11.1 1.2E+02 0.0034 13.2 1.4 29 67-95 3-35 (52)
7 >1kf6_C Fumarate reductase 15 8.9 98 0.0029 13.6 0.4 14 74-87 5-18 (39)
8 >3ir9_A Peptide chain release 8.8 1.3E+02 0.0039 12.9 1.0 14 33-46 3-16 (50)
9 >1knz_A NS34, NSP3, nonstructu 8.8 1.2E+02 0.0035 13.1 0.8 15 28-42 17-31 (54)
10 >2hzm_A RNA polymerase II medi 6.8 1.8E+02 0.0053 12.1 1.0 30 51-80 15-51 (93)
No 1
>>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} (A:112-121,A:243-269)
Probab=31.33 E-value=13 Score=18.24 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=13.0
Q ss_pred HHHHHCCCEEEEEECCCC
Q ss_conf 464302420246212335
Q gi|254780207|r 64 KEELIDGKKAMITTDNFM 81 (98)
Q Consensus 64 keelidgkkamittdnfm 81 (98)
|.||---...|+.|||||
T Consensus 20 kg~l~m~png~vktd~~m 37 (37)
T 1nhp_A 20 KGTLELHPNGLIKTDEYM 37 (37)
T ss_dssp TTTSCBCTTSCBCCCTTC
T ss_pred HCCHHHCCCCEEEECCCC
T ss_conf 300122249879779931
No 2
>>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 1xwe_A (A:1-122)
Probab=19.51 E-value=34 Score=16.02 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCC---CCCCCCEEEEEEEEEEEC
Q ss_conf 9234778999986023201157774087---400232058897334513
Q gi|254780207|r 1 MRHLILIMLLSILTTNIARAQVYHIHSP---RIATKSSIHIKCHSCTLN 46 (98)
Q Consensus 1 mrhlilimllsilttniaraqvyhihsp---riatkssihikchsctln 46 (98)
||-+.++.+|..+....+..+.|-|-+| |..++-.|.+.+|.++-.
T Consensus 1 m~ll~~~~~l~~~~~~~~q~p~y~i~aPnvlrvG~~E~V~Vq~~g~~~~ 49 (122)
T 3cu7_A 1 MGLLGILCFLIFLGKTWGQEQTYVISAPKIFRVGASENIVIQVYGYTEA 49 (122)
T ss_dssp -------------------CCCEEEEEESSEETTCCEECCEEECCCSCC
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCEEECCCCEEEEEEEECCCCC
T ss_conf 9679999999985120278971999989828289962999999869998
No 3
>>1l4t_A Gastrin/cholecystokinin type B receptor; hormone/growth factor receptor; NMR {Synthetic} (A:)
Probab=17.90 E-value=55 Score=14.88 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=12.3
Q ss_pred ECCCCCCCHHHHHHHH
Q ss_conf 1233588616899998
Q gi|254780207|r 77 TDNFMGGEPITFIKYL 92 (98)
Q Consensus 77 tdnfmggepitfikyl 92 (98)
.+....|.||.||..|
T Consensus 13 A~r~LsGaPISFIhLL 28 (30)
T 1l4t_A 13 AHRALSGAPISFIHLL 28 (30)
T ss_dssp HHHHHHSSCHHHHHHH
T ss_pred HHHHCCCCCHHHHHHH
T ss_conf 7764158972031210
No 4
>>1hzn_A CCK-A receptor, cholecystokinin type A receptor; hormone/growth factor; NMR {Synthetic} (A:)
Probab=12.93 E-value=86 Score=13.85 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=10.9
Q ss_pred ECCCCCCCHHHHHH
Q ss_conf 12335886168999
Q gi|254780207|r 77 TDNFMGGEPITFIK 90 (98)
Q Consensus 77 tdnfmggepitfik 90 (98)
.+....|.||.||.
T Consensus 16 A~r~LSGaPISFIh 29 (31)
T 1hzn_A 16 AERRLSGTPISFIL 29 (31)
T ss_dssp TTCSSSSSCHHHHC
T ss_pred HHHHCCCCCCEEEE
T ss_conf 56413699707998
No 5
>>1s5r_A High mobility group box transcription factor 1; protein-peptide complex, amphipathic helix motif, four- helix bundle, repressor-corepressor complex, transcription; NMR {Synthetic} (A:)
Probab=11.61 E-value=58 Score=14.77 Aligned_cols=13 Identities=54% Similarity=0.562 Sum_probs=9.4
Q ss_pred CCCCCCCCEEECH
Q ss_conf 5877543011114
Q gi|254780207|r 52 KTPSSSSAVYTKK 64 (98)
Q Consensus 52 ktpssssavytkk 64 (98)
-||-.|||||.-.
T Consensus 2 ftpmdssavyvls 14 (26)
T 1s5r_A 2 FTPMDSSAVYVLS 14 (26)
T ss_dssp CCCCSSSHHHHHH
T ss_pred CCCCCCCHHHHHH
T ss_conf 8766641457668
No 6
>>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} (A:)
Probab=11.10 E-value=1.2e+02 Score=13.18 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=20.5
Q ss_pred HHCCCEEEEEE----CCCCCCCHHHHHHHHHHH
Q ss_conf 30242024621----233588616899998653
Q gi|254780207|r 67 LIDGKKAMITT----DNFMGGEPITFIKYLFEE 95 (98)
Q Consensus 67 lidgkkamitt----dnfmggepitfikylfee 95 (98)
.++|||..|.. -..|.-+|-...||+..|
T Consensus 3 ~~eGkkTvi~Nf~~I~~~L~R~~~hv~kyl~~E 35 (52)
T 1k8b_A 3 LIEGNRTIIRNFRELAKAVNRDEEFFAKYLLKE 35 (52)
T ss_dssp EEETTEEEECCHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EEECCEEEEECHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 774474777469999988698988999999998
No 7
>>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} (C:92-130)
Probab=8.88 E-value=98 Score=13.56 Aligned_cols=14 Identities=50% Similarity=0.781 Sum_probs=10.7
Q ss_pred EEEECCCCCCCHHH
Q ss_conf 46212335886168
Q gi|254780207|r 74 MITTDNFMGGEPIT 87 (98)
Q Consensus 74 mittdnfmggepit 87 (98)
.|..|.-||.|||-
T Consensus 5 IiVk~eKMgpePii 18 (39)
T 1kf6_C 5 IIVKDEKMGPEPII 18 (39)
T ss_dssp CBSSSSBCCSHHHH
T ss_pred HHHCCCCCCCHHHH
T ss_conf 66158607816789
No 8
>>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} (A:72-121)
Probab=8.80 E-value=1.3e+02 Score=12.86 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=11.0
Q ss_pred CCEEEEEEEEEEEC
Q ss_conf 32058897334513
Q gi|254780207|r 33 KSSIHIKCHSCTLN 46 (98)
Q Consensus 33 kssihikchsctln 46 (98)
++-+.|||..|-..
T Consensus 3 k~RvtikC~nCgye 16 (50)
T 3ir9_A 3 AERVTTKCSVCGYE 16 (50)
T ss_dssp CEEEEEEESSSSCE
T ss_pred CEEEEEECCCCCCE
T ss_conf 14899975898726
No 9
>>1knz_A NS34, NSP3, nonstructural RNA-binding protein 34; protein-ssRNA complex, viral protein/RNA complex; 2.45A {Simian rotavirus A} (A:111-164)
Probab=8.79 E-value=1.2e+02 Score=13.09 Aligned_cols=15 Identities=53% Similarity=0.654 Sum_probs=11.7
Q ss_pred CCCCCCCEEEEEEEE
Q ss_conf 740023205889733
Q gi|254780207|r 28 PRIATKSSIHIKCHS 42 (98)
Q Consensus 28 priatkssihikchs 42 (98)
.||..|||--|+|..
T Consensus 17 kripgksss~ikctr 31 (54)
T 1knz_A 17 KRIPGKSSSIIKCTK 31 (54)
T ss_dssp ECCTTCSSCEEECCH
T ss_pred EECCCCCCHHHHHHH
T ss_conf 536898604998999
No 10
>>2hzm_A RNA polymerase II mediator complex subunit 20; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 2hzs_A (A:36-128)
Probab=6.84 E-value=1.8e+02 Score=12.13 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=19.9
Q ss_pred CCCCCCCCCEEE-------CHHHHHCCCEEEEEECCC
Q ss_conf 558775430111-------146430242024621233
Q gi|254780207|r 51 NKTPSSSSAVYT-------KKEELIDGKKAMITTDNF 80 (98)
Q Consensus 51 nktpssssavyt-------kkeelidgkkamittdnf 80 (98)
|..|+.|-..|| ++--+|.++.|++++..-
T Consensus 15 n~P~~~sk~lytlt~s~~~~~tVlI~n~sA~Vtt~~~ 51 (93)
T 2hzm_A 15 NLPADVSKLMYSITFHHHGRQTVLIKDNSAMVTTAAA 51 (93)
T ss_dssp CC----CCEEEEEEEESSSEEEEEEETTEEEEEECCG
T ss_pred CCCHHHHHHEEEEECCCCCCEEEEECCCEEEEECCCC
T ss_conf 7985342023685125689704998486579854752
Done!