Query gi|254780207|ref|YP_003064620.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 98
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 13:55:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780207.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l4t_A Gastrin/cholecystokinin 17.8 39 0.0017 14.9 1.3 16 77-92 13-28 (30)
2 2ciw_A Chloroperoxidase; oxido 14.4 66 0.0028 13.6 1.8 17 81-97 203-219 (299)
3 1hzn_A CCK-A receptor, cholecy 13.5 57 0.0024 14.0 1.3 14 77-90 16-29 (31)
4 1k8b_A EIF-2-beta, probable tr 11.9 74 0.0031 13.4 1.4 27 67-95 3-35 (52)
5 1s5r_A High mobility group box 11.5 41 0.0017 14.7 0.0 12 52-63 2-13 (26)
6 3c8f_A Pyruvate formate-lyase 8.4 89 0.0037 13.0 0.8 14 79-92 74-87 (245)
7 2cul_A Glucose-inhibited divis 5.6 1.5E+02 0.0065 11.7 1.3 28 57-84 101-128 (232)
8 2ppt_A Thioredoxin-2; thiredox 4.2 1E+02 0.0043 12.6 -0.9 10 34-43 11-20 (155)
9 3ofq_P 50S ribosomal protein L 4.1 2E+02 0.0083 11.1 0.7 17 16-32 66-82 (114)
10 2zuv_A Lacto-N-biose phosphory 3.8 2.1E+02 0.0089 10.9 1.6 16 70-85 304-320 (759)
No 1
>1l4t_A Gastrin/cholecystokinin type B receptor; hormone/growth factor receptor; NMR {Synthetic} SCOP: j.82.1.1
Probab=17.77 E-value=39 Score=14.86 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=12.4
Q ss_pred ECCCCCCCHHHHHHHH
Q ss_conf 1233588616899998
Q gi|254780207|r 77 TDNFMGGEPITFIKYL 92 (98)
Q Consensus 77 tdnfmggepitfikyl 92 (98)
.+....|.||.||..|
T Consensus 13 A~~~LsGaPIsFIhLL 28 (30)
T 1l4t_A 13 AHRALSGAPISFIHLL 28 (30)
T ss_dssp HHHHHHSSCHHHHHHH
T ss_pred HHHHCCCCCHHHHHHH
T ss_conf 7764158972031210
No 2
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=14.37 E-value=66 Score=13.64 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHCC
Q ss_conf 58861689999865305
Q gi|254780207|r 81 MGGEPITFIKYLFEEDK 97 (98)
Q Consensus 81 mggepitfikylfeedk 97 (98)
.|.-++.+++|+|||++
T Consensus 203 ~~~v~~d~ve~fF~eER 219 (299)
T 2ciw_A 203 NPLVRIDWWKYWFTNES 219 (299)
T ss_dssp SCCEEHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHCC
T ss_conf 78776799999873155
No 3
>1hzn_A CCK-A receptor, cholecystokinin type A receptor; hormone/growth factor; NMR {Synthetic} SCOP: j.82.1.1
Probab=13.54 E-value=57 Score=14.00 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.0
Q ss_pred ECCCCCCCHHHHHH
Q ss_conf 12335886168999
Q gi|254780207|r 77 TDNFMGGEPITFIK 90 (98)
Q Consensus 77 tdnfmggepitfik 90 (98)
.+....|.||.||.
T Consensus 16 A~~aLSGaPISFIh 29 (31)
T 1hzn_A 16 AERRLSGTPISFIL 29 (31)
T ss_dssp TTCSSSSSCHHHHC
T ss_pred HHHHCCCCCEEEEE
T ss_conf 67642589747787
No 4
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=11.88 E-value=74 Score=13.40 Aligned_cols=27 Identities=41% Similarity=0.800 Sum_probs=20.1
Q ss_pred HHCCCEEEEEECCC------CCCCHHHHHHHHHHH
Q ss_conf 30242024621233------588616899998653
Q gi|254780207|r 67 LIDGKKAMITTDNF------MGGEPITFIKYLFEE 95 (98)
Q Consensus 67 lidgkkamittdnf------mggepitfikylfee 95 (98)
+++|||..|. || |.-+|-.+.||+..|
T Consensus 3 ~~EGkkTvi~--Nf~~I~~~L~R~p~hv~kf~~~E 35 (52)
T 1k8b_A 3 LIEGNRTIIR--NFRELAKAVNRDEEFFAKYLLKE 35 (52)
T ss_dssp EEETTEEEEC--CHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EEECCEEEEE--CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 6725718876--69999988599989999999998
No 5
>1s5r_A High mobility group box transcription factor 1; protein-peptide complex, amphipathic helix motif, four- helix bundle, repressor-corepressor complex, transcription; NMR {Synthetic} SCOP: j.114.1.1
Probab=11.53 E-value=41 Score=14.75 Aligned_cols=12 Identities=58% Similarity=0.606 Sum_probs=9.2
Q ss_pred CCCCCCCCEEEC
Q ss_conf 587754301111
Q gi|254780207|r 52 KTPSSSSAVYTK 63 (98)
Q Consensus 52 ktpssssavytk 63 (98)
-||-.|||||.-
T Consensus 2 ftpmdssavyvl 13 (26)
T 1s5r_A 2 FTPMDSSAVYVL 13 (26)
T ss_dssp CCCCSSSHHHHH
T ss_pred CCCCCCCHHHHH
T ss_conf 876664145766
No 6
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=8.39 E-value=89 Score=12.97 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=9.7
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 33588616899998
Q gi|254780207|r 79 NFMGGEPITFIKYL 92 (98)
Q Consensus 79 nfmggepitfikyl 92 (98)
.|.||||.....++
T Consensus 74 ~~sGGEP~l~~~~l 87 (245)
T 3c8f_A 74 TASGGEAILQAEFV 87 (245)
T ss_dssp EEEESCGGGGHHHH
T ss_pred ECCCCCCCCCHHHH
T ss_conf 53555653469999
No 7
>2cul_A Glucose-inhibited division protein A-related protein, probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus HB8} SCOP: c.3.1.7
Probab=5.59 E-value=1.5e+02 Score=11.68 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=22.0
Q ss_pred CCCEEECHHHHHCCCEEEEEECCCCCCC
Q ss_conf 4301111464302420246212335886
Q gi|254780207|r 57 SSAVYTKKEELIDGKKAMITTDNFMGGE 84 (98)
Q Consensus 57 ssavytkkeelidgkkamittdnfmgge 84 (98)
-..|.|+..+-+.+|...+||-.|++|.
T Consensus 101 V~GV~t~~G~~~~akaVILTTGTFL~G~ 128 (232)
T 2cul_A 101 VVGVRTWEGPPARGEKVVLAVGSFLGAR 128 (232)
T ss_dssp EEEEEETTSCCEECSEEEECCTTCSSCE
T ss_pred EEEEEECCCCEEEEEEEEEECCCCCCCE
T ss_conf 5279977898999718999267333440
No 8
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=4.19 E-value=1e+02 Score=12.65 Aligned_cols=10 Identities=30% Similarity=1.029 Sum_probs=5.0
Q ss_pred CEEEEEEEEE
Q ss_conf 2058897334
Q gi|254780207|r 34 SSIHIKCHSC 43 (98)
Q Consensus 34 ssihikchsc 43 (98)
.++.+.|-+|
T Consensus 11 ~~~~~~c~~c 20 (155)
T 2ppt_A 11 ESLRLTCLAC 20 (155)
T ss_dssp CEEEEECTTT
T ss_pred CCEEEECCCC
T ss_conf 5707889598
No 9
>3ofq_P 50S ribosomal protein L19; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=4.11 E-value=2e+02 Score=11.09 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=10.4
Q ss_pred CCCCEEEEEECCCCCCC
Q ss_conf 32011577740874002
Q gi|254780207|r 16 NIARAQVYHIHSPRIAT 32 (98)
Q Consensus 16 niaraqvyhihspriat 32 (98)
.+.-.+++.+|||.|..
T Consensus 66 g~GVEr~fpl~SP~I~~ 82 (114)
T 3ofq_P 66 GEGVERVFQTHSPVVDS 82 (114)
T ss_dssp TBCEECCEETTCGGGCC
T ss_pred CCCEEEEEECCCCCCCE
T ss_conf 86599999877999643
No 10
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=3.78 E-value=2.1e+02 Score=10.93 Aligned_cols=16 Identities=50% Similarity=0.958 Sum_probs=0.0
Q ss_pred CCEEEE-EECCCCCCCH
Q ss_conf 420246-2123358861
Q gi|254780207|r 70 GKKAMI-TTDNFMGGEP 85 (98)
Q Consensus 70 gkkami-ttdnfmggep 85 (98)
||+||. --||..|-||
T Consensus 304 GKeAmMFlGD~WIGtEP 320 (759)
T 2zuv_A 304 GKEAMMFLGDQWIGTEP 320 (759)
T ss_dssp TCEEEEEESSSCTTTCT
T ss_pred CCEEEEECCCCEEECCC
T ss_conf 87679963783420466
Done!