BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780207|ref|YP_003064620.1| hypothetical protein
CLIBASIA_00460 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780207|ref|YP_003064620.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039884|gb|ACT56680.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 98

 Score =  201 bits (511), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
          MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV
Sbjct: 1  MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60

Query: 61 YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
          YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK
Sbjct: 61 YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98


>gi|315122632|ref|YP_004063121.1| hypothetical protein CKC_04420 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496034|gb|ADR52633.1| hypothetical protein CKC_04420 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 119

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 2/100 (2%)

Query: 1   MRHLILIMLLSILTTNIARAQ-VYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSS-SS 58
           M  L+L ++L   +  + +AQ VY IH P      SI++KC SC L K   +   +  + 
Sbjct: 1   MNFLMLAVILFAFSAQVGKAQSVYEIHHPIRTQDFSIYVKCLSCELPKQSKSNIQNQLND 60

Query: 59  AVYTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
            + T+KEE+IDGK A++ TDN MG EP TFIK+   E++K
Sbjct: 61  VISTQKEEIIDGKNAIVMTDNLMGDEPETFIKHFKHEEQK 100


>gi|159185417|ref|NP_353669.2| hypothetical protein Atu8084 [Agrobacterium tumefaciens str. C58]
 gi|159140665|gb|AAK86454.2| conserved hypothetical protein [Agrobacterium tumefaciens str.
          C58]
          Length = 169

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 1  MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
          M+ L L  ++ + + +   + + +I+  ++   S + + C  C   K   NK  +   AV
Sbjct: 1  MQRLFLTAIVVLTSGSAMASSIEYINDVQVTNGSFVRLNCAGCQPLK---NKPAAQGYAV 57

Query: 61 -----YTKKEEL--IDGKKAMITTDNFMGGEPITFIK 90
                T+  E+  +DGK+ ++ T+ ++GG P+TF+ 
Sbjct: 58 PSIEPGTQHTEMHEVDGKRTLVRTEAWLGGAPVTFVS 94


>gi|325292028|ref|YP_004277892.1| hypothetical protein AGROH133_04143 [Agrobacterium sp. H13-3]
 gi|325059881|gb|ADY63572.1| hypothetical protein AGROH133_04143 [Agrobacterium sp. H13-3]
          Length = 170

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 1  MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKT----PSS 56
          MR L+L  ++++   +   + + +++    +  S + + C  C   K +        PS 
Sbjct: 1  MRRLLLTAVVALTGGSAMASSIEYVNGTHTSNGSFVRLDCARCQPVKDNPAPEGFAIPSI 60

Query: 57 SSAVYTKKEELIDGKKAMITTDNFMGGEPITFI 89
                 +   I+GK+ ++ T+ ++GG P+TF+
Sbjct: 61 EPGTQHTEMREIEGKRTLVRTEAWLGGAPVTFV 93


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254780207|ref|YP_003064620.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039884|gb|ACT56680.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 98

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
          MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV
Sbjct: 1  MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60

Query: 61 YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
          YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK
Sbjct: 61 YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98


>gi|315122632|ref|YP_004063121.1| hypothetical protein CKC_04420 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496034|gb|ADR52633.1| hypothetical protein CKC_04420 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 119

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 2/100 (2%)

Query: 1   MRHLILIMLLSILTTNIARAQ-VYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSS-SS 58
           M  L+L ++L   +  + +AQ VY IH P      SI++KC SC L K   +   +  + 
Sbjct: 1   MNFLMLAVILFAFSAQVGKAQSVYEIHHPIRTQDFSIYVKCLSCELPKQSKSNIQNQLND 60

Query: 59  AVYTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
            + T+KEE+IDGK A++ TDN MG EP TFIK+   E++K
Sbjct: 61  VISTQKEEIIDGKNAIVMTDNLMGDEPETFIKHFKHEEQK 100


>gi|159185417|ref|NP_353669.2| hypothetical protein Atu8084 [Agrobacterium tumefaciens str. C58]
 gi|159140665|gb|AAK86454.2| conserved hypothetical protein [Agrobacterium tumefaciens str.
          C58]
          Length = 169

 Score = 37.7 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 1  MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
          M+ L L  ++ + + +   + + +I+  ++   S + + C  C   +   NK  +   AV
Sbjct: 1  MQRLFLTAIVVLTSGSAMASSIEYINDVQVTNGSFVRLNCAGC---QPLKNKPAAQGYAV 57

Query: 61 -----YTKKEEL--IDGKKAMITTDNFMGGEPITFI 89
                T+  E+  +DGK+ ++ T+ ++GG P+TF+
Sbjct: 58 PSIEPGTQHTEMHEVDGKRTLVRTEAWLGGAPVTFV 93


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.319    0.137    0.365 

Lambda     K      H
   0.267   0.0415    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,642,646,247
Number of Sequences: 13984884
Number of extensions: 53979623
Number of successful extensions: 144433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 144426
Number of HSP's gapped (non-prelim): 10
length of query: 98
length of database: 4,792,584,752
effective HSP length: 67
effective length of query: 31
effective length of database: 3,855,597,524
effective search space: 119523523244
effective search space used: 119523523244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)