RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780207|ref|YP_003064620.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter asiaticus str. psy62] (98 letters) >gnl|CDD|173950 cd08191, HHD, 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Length = 386 Score = 25.0 bits (55), Expect = 4.7 Identities = 8/17 (47%), Positives = 11/17 (64%) Query: 70 GKKAMITTDNFMGGEPI 86 G +A+I TD M G P+ Sbjct: 22 GSRALIVTDERMAGTPV 38 >gnl|CDD|146977 pfam04596, Pox_F15, Poxvirus protein F15. Length = 137 Score = 25.0 bits (55), Expect = 5.2 Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 20 AQVYHIHSPRIATKSSIHIKCHSCTLN 46 +V H+ + T S+HI+ H TL+ Sbjct: 29 DEVRHMPRNSVNTSESVHIRGHKFTLS 55 >gnl|CDD|37474 KOG2263, KOG2263, KOG2263, Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]. Length = 765 Score = 24.6 bits (53), Expect = 5.9 Identities = 9/15 (60%), Positives = 10/15 (66%) Query: 22 VYHIHSPRIATKSSI 36 VY IHSPRI + I Sbjct: 698 VYDIHSPRIPSTDEI 712 >gnl|CDD|30873 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]. Length = 447 Score = 24.5 bits (53), Expect = 7.1 Identities = 8/26 (30%), Positives = 12/26 (46%) Query: 66 ELIDGKKAMITTDNFMGGEPITFIKY 91 +DG++A I TD+ G I Sbjct: 138 RSLDGRQAGIATDSNHGNARILDEDS 163 >gnl|CDD|32539 COG2403, COG2403, Predicted GTPase [General function prediction only]. Length = 449 Score = 24.1 bits (52), Expect = 8.8 Identities = 6/23 (26%), Positives = 12/23 (52%) Query: 56 SSSAVYTKKEELIDGKKAMITTD 78 ++S E I+GK+ ++ D Sbjct: 305 AASVFRPDPPEDIEGKRVLVVED 327 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.132 0.381 Gapped Lambda K H 0.267 0.0722 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,115,297 Number of extensions: 45790 Number of successful extensions: 109 Number of sequences better than 10.0: 1 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 11 Length of query: 98 Length of database: 6,263,737 Length adjustment: 66 Effective length of query: 32 Effective length of database: 4,837,543 Effective search space: 154801376 Effective search space used: 154801376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.4 bits)