RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780207|ref|YP_003064620.1| hypothetical protein
CLIBASIA_00460 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>gnl|CDD|173950 cd08191, HHD, 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes
          the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 
          6-hydroxyhexanoate dehydrogenase (HHD). The
          6-hydroxyhexanoate dehydrogenase catalyzes the
          oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some
          bacteria can grow on cyclic ketones, cyclohexylamine,
          and alcohols as sole carbon source. Cyclohexylamine is
          an insecticide and antiseptic in various industries and
          is considered a possible environmental pollutant. The
          degradation of these chemical compounds are through the
          cyclohexanol and cyclohexanone biological oxidation
          pathway. The intermediates of this pathway include
          cyclohexanol, cyclohexanone, e-caprolactone,
          6-hydroxyhexanoate, 6-oxohexanoate and adipate. The
          6-hydroxyhexanoate dehydrogenase catalyzes the
          oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
          Length = 386

 Score = 25.0 bits (55), Expect = 4.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 70 GKKAMITTDNFMGGEPI 86
          G +A+I TD  M G P+
Sbjct: 22 GSRALIVTDERMAGTPV 38


>gnl|CDD|146977 pfam04596, Pox_F15, Poxvirus protein F15. 
          Length = 137

 Score = 25.0 bits (55), Expect = 5.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 20 AQVYHIHSPRIATKSSIHIKCHSCTLN 46
           +V H+    + T  S+HI+ H  TL+
Sbjct: 29 DEVRHMPRNSVNTSESVHIRGHKFTLS 55


>gnl|CDD|37474 KOG2263, KOG2263, KOG2263, Methionine synthase II
           (cobalamin-independent) [Amino acid transport and
           metabolism].
          Length = 765

 Score = 24.6 bits (53), Expect = 5.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 22  VYHIHSPRIATKSSI 36
           VY IHSPRI +   I
Sbjct: 698 VYDIHSPRIPSTDEI 712


>gnl|CDD|30873 COG0527, LysC, Aspartokinases [Amino acid transport and
           metabolism].
          Length = 447

 Score = 24.5 bits (53), Expect = 7.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 66  ELIDGKKAMITTDNFMGGEPITFIKY 91
             +DG++A I TD+  G   I     
Sbjct: 138 RSLDGRQAGIATDSNHGNARILDEDS 163


>gnl|CDD|32539 COG2403, COG2403, Predicted GTPase [General function prediction
           only].
          Length = 449

 Score = 24.1 bits (52), Expect = 8.8
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 56  SSSAVYTKKEELIDGKKAMITTD 78
           ++S       E I+GK+ ++  D
Sbjct: 305 AASVFRPDPPEDIEGKRVLVVED 327


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,115,297
Number of extensions: 45790
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 11
Length of query: 98
Length of database: 6,263,737
Length adjustment: 66
Effective length of query: 32
Effective length of database: 4,837,543
Effective search space: 154801376
Effective search space used: 154801376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)