RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780207|ref|YP_003064620.1| hypothetical protein
CLIBASIA_00460 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
          musculus} (C:1-129)
          Length = 129

 Score = 26.3 bits (57), Expect = 1.4
 Identities = 10/44 (22%), Positives = 17/44 (38%)

Query: 1  MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCT 44
          M  L L++ L +L  + + A+     SP   + S        C 
Sbjct: 3  MFSLALLLSLLLLCVSDSGAETTVTQSPASLSMSIGEKVTIRCI 46


>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
           autoinhibition, substituted aldamine, lyase; HET: PLP;
           1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
           1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* (A:100-281)
          Length = 182

 Score = 23.8 bits (50), Expect = 8.2
 Identities = 7/51 (13%), Positives = 12/51 (23%)

Query: 18  ARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAVYTKKEELI 68
           A                    +  S + + H     P     V  + EE +
Sbjct: 132 ASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEAL 182


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 722,930
Number of extensions: 25685
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 7
Length of query: 98
Length of database: 4,956,049
Length adjustment: 57
Effective length of query: 41
Effective length of database: 3,029,164
Effective search space: 124195724
Effective search space used: 124195724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)