BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780207|ref|YP_003064620.1| hypothetical protein
CLIBASIA_00460 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780207|ref|YP_003064620.1| hypothetical protein CLIBASIA_00460 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 98

 Score =  201 bits (511), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60
          MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV
Sbjct: 1  MRHLILIMLLSILTTNIARAQVYHIHSPRIATKSSIHIKCHSCTLNKHHINKTPSSSSAV 60

Query: 61 YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98
          YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK
Sbjct: 61 YTKKEELIDGKKAMITTDNFMGGEPITFIKYLFEEDKK 98


>gi|254780326|ref|YP_003064739.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 416

 Score = 20.8 bits (42), Expect = 5.0,   Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 68  IDGKKAMITTDNF 80
           +D  KAM+TTD +
Sbjct: 153 LDSAKAMMTTDRY 165


>gi|254780153|ref|YP_003064566.1| phosphoserine aminotransferase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 391

 Score = 20.8 bits (42), Expect = 5.7,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 39 KCHSCTLNKHHINK 52
          + H C L K  INK
Sbjct: 39 RSHRCVLGKERINK 52


>gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 419

 Score = 20.8 bits (42), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 30 IATKSSIHIKCHSCTLNKHHINKTPSSS----------SAVYTKKEELIDGKKAMITTD 78
          I      H+  H C  N   +     +S           ++Y KK   IDGK A+   D
Sbjct: 8  IGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVD 66


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.132    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,140
Number of Sequences: 1233
Number of extensions: 1976
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 98
length of database: 328,796
effective HSP length: 61
effective length of query: 37
effective length of database: 253,583
effective search space:  9382571
effective search space used:  9382571
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 31 (16.5 bits)