Query gi|254780208|ref|YP_003064621.1| hypothetical protein CLIBASIA_00465 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 66
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 23 15:07:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780208.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3831 consensus 74.2 7.6 0.00019 19.7 5.4 50 10-59 59-118 (196)
2 pfam10872 DUF2740 Protein of u 51.4 11 0.00027 18.9 2.1 18 35-52 10-27 (48)
3 KOG1020 consensus 37.9 27 0.0007 16.6 2.4 42 5-47 1326-1372(1692)
4 KOG0568 consensus 31.7 45 0.0011 15.5 2.8 42 3-44 1-48 (342)
5 KOG4591 consensus 29.5 21 0.00054 17.2 0.8 17 47-63 43-59 (280)
6 TIGR01755 flav_wrbA flavoprote 28.5 18 0.00045 17.7 0.2 18 4-21 88-105 (205)
7 COG1290 QcrB Cytochrome b subu 19.1 80 0.002 14.1 3.9 29 3-31 82-110 (381)
8 pfam10010 consensus 17.6 79 0.002 14.1 1.8 10 19-28 82-91 (95)
9 cd05507 Bromo_brd8_like Bromod 12.9 75 0.0019 14.2 0.6 37 28-64 39-75 (104)
10 pfam04892 VanZ VanZ like famil 12.1 1.2E+02 0.0032 13.1 7.5 17 11-27 44-60 (129)
No 1
>KOG3831 consensus
Probab=74.16 E-value=7.6 Score=19.66 Aligned_cols=50 Identities=30% Similarity=0.400 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q ss_conf 9999999976699999997132168899888878999999999----------9999999
Q gi|254780208|r 10 IMHLFLDQIGNFLMFFPMLRNRHMSIKILKNTLTTAFISSFKS----------FISRFLH 59 (66)
Q Consensus 10 imhlfldqignflmffpmlrnrhmsikilkntlttafissfks----------fisrflh 59 (66)
||.-|-|--..---....++||-||-..-..+|.|+.-|-.|+ ||+.|..
T Consensus 59 ildafedlenppaav~av~kn~~ls~s~k~sal~t~~wsiikakrq~l~~pdgfia~fyn 118 (196)
T KOG3831 59 ILDAFEDLENPPAAVLAVLKNRFLSDSFKESALATACWSIIKAKRQLLKNPDGFIAHFYN 118 (196)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 888777502981999999998998878889999999999999999883098338898750
No 2
>pfam10872 DUF2740 Protein of unknown function (DUF2740). This family of proteins with unknown function has a highly conserved sequence.
Probab=51.42 E-value=11 Score=18.87 Aligned_cols=18 Identities=50% Similarity=0.639 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899888878999999999
Q gi|254780208|r 35 IKILKNTLTTAFISSFKS 52 (66)
Q Consensus 35 ikilkntlttafissfks 52 (66)
-|.-||.|...|.||||.
T Consensus 10 dklhknilrdrflssfkq 27 (48)
T pfam10872 10 DKLHKNILRDRFLSSFKQ 27 (48)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 799999999999997148
No 3
>KOG1020 consensus
Probab=37.86 E-value=27 Score=16.64 Aligned_cols=42 Identities=38% Similarity=0.465 Sum_probs=29.7
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99999-----99999999766999999971321688998888789999
Q gi|254780208|r 5 GMMIR-----IMHLFLDQIGNFLMFFPMLRNRHMSIKILKNTLTTAFI 47 (66)
Q Consensus 5 gmmir-----imhlfldqignflmffpmlrnrhmsikilkntlttafi 47 (66)
||-.+ ||.+|||+|=.- -|---+++|+.+|++++-+|.-..+
T Consensus 1326 g~~s~~~~~~i~Qlfl~~ILe~-cl~~d~~~r~~aikvl~liL~QGLV 1372 (1692)
T KOG1020 1326 GMGSSDGVSAIMQLFLDNILES-CLDRDLQVRLVAIKVLKLILNQGLV 1372 (1692)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 3323310689999999999999-9661048899999999999970587
No 4
>KOG0568 consensus
Probab=31.71 E-value=45 Score=15.45 Aligned_cols=42 Identities=31% Similarity=0.691 Sum_probs=28.4
Q ss_pred HHHHHHHHH--HHHHHHHH----HHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 699999999--99999976----6999999971321688998888789
Q gi|254780208|r 3 IWGMMIRIM--HLFLDQIG----NFLMFFPMLRNRHMSIKILKNTLTT 44 (66)
Q Consensus 3 iwgmmirim--hlfldqig----nflmffpmlrnrhmsikilkntltt 44 (66)
.|-||..|. |||-..+. ..|-+|...|||-|+.+--|.....
T Consensus 1 m~vmmaqil~~~l~k~sv~~~rvkmlpyfgiirnrll~~~kske~~~e 48 (342)
T KOG0568 1 MWVMMAQILAGHLFKASVAINRVKMLPYFGIIRNRLLHLHKSKEKIME 48 (342)
T ss_pred CHHHHHHHHHHHHHHHEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 916789999751344100002100242024688889887662999999
No 5
>KOG4591 consensus
Probab=29.54 E-value=21 Score=17.23 Aligned_cols=17 Identities=53% Similarity=0.593 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999714
Q gi|254780208|r 47 ISSFKSFISRFLHMIAN 63 (66)
Q Consensus 47 issfksfisrflhmian 63 (66)
-||-+|||||.|...+.
T Consensus 43 eSs~dSF~SRLLaitad 59 (280)
T KOG4591 43 ESSPDSFISRLLAITAD 59 (280)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 57953589999999999
No 6
>TIGR01755 flav_wrbA flavoprotein WrbA; InterPro: IPR010089 This entry represents a protein, WrbA, related to and slightly larger than flavodoxin. In Escherichia coli, this protein is produced during stationary phase, binds to the trp repressor, and makes trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Three copies are found in Sinorhizobium meliloti, and members are found in species in which homologs of the Escherichia coli trp operon repressor TrpR (P03032 from SWISSPROT) are not detected.; GO: 0010181 FMN binding, 0016481 negative regulation of transcription.
Probab=28.50 E-value=18 Score=17.67 Aligned_cols=18 Identities=44% Similarity=0.715 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999997669
Q gi|254780208|r 4 WGMMIRIMHLFLDQIGNF 21 (66)
Q Consensus 4 wgmmirimhlfldqignf 21 (66)
+|+|---|.-||||.|-.
T Consensus 88 yG~masQMr~fLDqtGGL 105 (205)
T TIGR01755 88 YGNMASQMRNFLDQTGGL 105 (205)
T ss_pred CCCCHHHHHHHHHCCCCC
T ss_conf 345046888874105770
No 7
>COG1290 QcrB Cytochrome b subunit of the bc complex [Energy production and conversion]
Probab=19.10 E-value=80 Score=14.10 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 69999999999999976699999997132
Q gi|254780208|r 3 IWGMMIRIMHLFLDQIGNFLMFFPMLRNR 31 (66)
Q Consensus 3 iwgmmirimhlfldqignflmffpmlrnr 31 (66)
-+|..+|-||+.....=..+++..|.|+-
T Consensus 82 ~~Gw~lr~~H~~~A~~m~~~~~iHm~r~~ 110 (381)
T COG1290 82 PYGWLLRYMHLWGASLMFALVYLHMFRGF 110 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 83999999999999999999999986442
No 8
>pfam10010 consensus
Probab=17.61 E-value=79 Score=14.12 Aligned_cols=10 Identities=60% Similarity=1.138 Sum_probs=3.4
Q ss_pred HHHHHHHHHH
Q ss_conf 6699999997
Q gi|254780208|r 19 GNFLMFFPML 28 (66)
Q Consensus 19 gnflmffpml 28 (66)
|++.|++-||
T Consensus 82 ~D~~M~~~~l 91 (95)
T pfam10010 82 GDFVMFADML 91 (95)
T ss_pred HHHHHHHHHH
T ss_conf 7899999998
No 9
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=12.92 E-value=75 Score=14.25 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=30.2
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7132168899888878999999999999999997145
Q gi|254780208|r 28 LRNRHMSIKILKNTLTTAFISSFKSFISRFLHMIANK 64 (66)
Q Consensus 28 lrnrhmsikilkntlttafissfksfisrflhmiank 64 (66)
+-.+.|.....++.+......|...|+..+..|..|-
T Consensus 39 iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~lm~~Na 75 (104)
T cd05507 39 VVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNA 75 (104)
T ss_pred HHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9189778999999986599999999999999999999
No 10
>pfam04892 VanZ VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.
Probab=12.08 E-value=1.2e+02 Score=13.05 Aligned_cols=17 Identities=41% Similarity=1.063 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999997669999999
Q gi|254780208|r 11 MHLFLDQIGNFLMFFPM 27 (66)
Q Consensus 11 mhlfldqignflmffpm 27 (66)
-.-+.+-+||.++|+|+
T Consensus 44 ~~~~~~~~gNi~~F~Pl 60 (129)
T pfam04892 44 PDTFIQKLGNILLFFPL 60 (129)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999899999789
Done!