Query gi|254780208|ref|YP_003064621.1| hypothetical protein CLIBASIA_00465 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 66 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Mon May 23 14:47:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780208.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2jxj_A Histone demethylase ja 10.8 1.2E+02 0.0035 12.8 2.1 15 9-23 6-20 (37) 2 >3ir4_A Glutaredoxin 2; glutat 9.3 1.2E+02 0.0037 12.7 1.0 12 22-33 89-100 (131) 3 >1a6d_B Thermosome (beta subun 7.5 1E+02 0.0031 13.1 0.0 29 30-58 2-30 (104) 4 >2cy7_A Cysteine protease APG4 7.1 1.7E+02 0.0051 11.9 1.1 17 2-18 73-89 (365) 5 >2p82_A Cysteine protease ATG4 6.2 1.9E+02 0.0057 11.7 1.1 16 2-17 69-84 (355) 6 >2v3c_C SRP54, signal recognit 5.6 1.3E+02 0.0039 12.5 -0.3 30 31-60 70-107 (108) 7 >2kix_A BM2 protein; channel, 5.1 2.3E+02 0.0067 11.3 2.6 16 47-62 7-22 (33) 8 >1q3q_A Thermosome alpha subun 4.9 1.3E+02 0.0038 12.6 -0.7 28 30-57 2-29 (105) 9 >2veq_A Centromere DNA-binding 4.9 2.3E+02 0.0069 11.2 2.2 14 45-58 73-86 (131) 10 >2efe_A Similarity to vacuolar 4.7 2.2E+02 0.0066 11.3 0.4 23 35-57 16-38 (96) No 1 >>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} (A:1-37) Probab=10.78 E-value=1.2e+02 Score=12.81 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=11.3 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999766999 Q gi|254780208|r 9 RIMHLFLDQIGNFLM 23 (66) Q Consensus 9 rimhlfldqignflm 23 (66) |+---|||||..|-- T Consensus 6 RVkLnfLdqiaKfWe 20 (37) T 2jxj_A 6 RVRLDFLDQLAKFWE 20 (37) T ss_dssp HHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHH T ss_conf 069999999999999 No 2 >>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE GTT; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A (A:1-80,A:168-218) Probab=9.31 E-value=1.2e+02 Score=12.72 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=9.0 Q ss_pred HHHHHHHHCCHH Q ss_conf 999999713216 Q gi|254780208|r 22 LMFFPMLRNRHM 33 (66) Q Consensus 22 lmffpmlrnrhm 33 (66) ...||+|||-.+ T Consensus 89 i~~fp~lr~lt~ 100 (131) T 3ir4_A 89 IHLFPLLRNLTL 100 (131) T ss_dssp HHHHHHHHHHTT T ss_pred HHHHHHHHHHHC T ss_conf 999999998753 No 3 >>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, protein folding, ATPase; 2.60A {Thermoplasma acidophilum} (B:147-215,B:368-402) Probab=7.51 E-value=1e+02 Score=13.11 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=22.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 32168899888878999999999999999 Q gi|254780208|r 30 NRHMSIKILKNTLTTAFISSFKSFISRFL 58 (66) Q Consensus 30 nrhmsikilkntlttafissfksfisrfl 58 (66) |+..-+++.+.++++-+++..+.+++... T Consensus 2 D~e~L~~va~TslsSK~~~~~~d~la~lv 30 (104) T 1a6d_B 2 EKALLLKMAQTSLNSKSASVAKDKLAEIS 30 (104) T ss_dssp HHHHHHHHHHHHHTTSGGGGGHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 58998875551025313566777777788 No 4 >>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} (A:1-365) Probab=7.06 E-value=1.7e+02 Score=11.93 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=13.1 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 06999999999999997 Q gi|254780208|r 2 CIWGMMIRIMHLFLDQI 18 (66) Q Consensus 2 ciwgmmirimhlfldqi 18 (66) |=||-|||-....|.|. T Consensus 73 ~GWGCMlR~gQMlLAqa 89 (365) T 2cy7_A 73 TGWGCMLRCGQMIFAQA 89 (365) T ss_dssp TTTCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHH T ss_conf 76127887788888889 No 5 >>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol protease, transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} (A:) Probab=6.23 E-value=1.9e+02 Score=11.69 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=12.7 Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 0699999999999999 Q gi|254780208|r 2 CIWGMMIRIMHLFLDQ 17 (66) Q Consensus 2 ciwgmmirimhlfldq 17 (66) |=||-|||-....|.| T Consensus 69 ~GWGCmlR~gQMlLAq 84 (355) T 2p82_A 69 AGWGCMLRCGQMMLAQ 84 (355) T ss_dssp TTTCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHH T ss_conf 7740799999999988 No 6 >>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} (C:1-91,C:280-296) Probab=5.61 E-value=1.3e+02 Score=12.55 Aligned_cols=30 Identities=37% Similarity=0.435 Sum_probs=17.8 Q ss_pred CHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH Q ss_conf 216889988887899999--------999999999999 Q gi|254780208|r 31 RHMSIKILKNTLTTAFIS--------SFKSFISRFLHM 60 (66) Q Consensus 31 rhmsikilkntlttafis--------sfksfisrflhm 60 (66) +..-+++++..|+.-.-. .-|.||||.|.| T Consensus 70 ~~~v~kav~deL~~iL~p~~~~~~~~~~~~~~~~~~~~ 107 (108) T 2v3c_C 70 KEHIIKIVYEELVKLLGEEAKKLEPFDPKKFISRLLGM 107 (108) T ss_dssp HHHHHHHHHHHHHHHHCCSCCCCCBCCHHHHHHHHTCS T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHCC T ss_conf 99999999999998746332203332649999988436 No 7 >>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus} (A:) Probab=5.11 E-value=2.3e+02 Score=11.30 Aligned_cols=16 Identities=56% Similarity=0.663 Sum_probs=10.5 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999971 Q gi|254780208|r 47 ISSFKSFISRFLHMIA 62 (66) Q Consensus 47 issfksfisrflhmia 62 (66) |-|.-|||-.-||.+| T Consensus 7 ilsi~sfilsalhf~a 22 (33) T 2kix_A 7 ILSISSFILSALHFIA 22 (33) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 8 >>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} (A:149-217,A:369-404) Probab=4.95 E-value=1.3e+02 Score=12.63 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=21.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3216889988887899999999999999 Q gi|254780208|r 30 NRHMSIKILKNTLTTAFISSFKSFISRF 57 (66) Q Consensus 30 nrhmsikilkntlttafissfksfisrf 57 (66) ||..-+++.+.++++-+++..+.|++.. T Consensus 2 d~e~L~~va~TslsSK~~~~~~d~la~l 29 (105) T 1q3q_A 2 DEETLLKIAATSITGKNAESHKELLAKL 29 (105) T ss_dssp CHHHHHHHHHHHSCSSTTGGGHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 2889988888742022115589999999 No 9 >>2veq_A Centromere DNA-binding protein complex CBF3 subunit B; transcription factor, cell cycle, zinc, CEP3P, nucleus, phosphorylation; 2.49A {Saccharomyces cerevisiae} PDB: 2quq_A (A:278-408) Probab=4.87 E-value=2.3e+02 Score=11.20 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780208|r 45 AFISSFKSFISRFL 58 (66) Q Consensus 45 afissfksfisrfl 58 (66) .|-|.|.+|+++|+ T Consensus 73 S~nskFekF~~~f~ 86 (131) T 2veq_A 73 SNNSRFQKFIALFQ 86 (131) T ss_dssp CHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 67778999999999 No 10 >>2efe_A Similarity to vacuolar protein sorting- associated protein VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A* (A:1-96) Probab=4.73 E-value=2.2e+02 Score=11.31 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89988887899999999999999 Q gi|254780208|r 35 IKILKNTLTTAFISSFKSFISRF 57 (66) Q Consensus 35 ikilkntlttafissfksfisrf 57 (66) ++-||+.-......+.|+||.+| T Consensus 16 L~~Lk~psa~~i~k~ik~Fi~~f 38 (96) T 2efe_A 16 LERMRKPSAGDFVKSIKSFIVSF 38 (96) T ss_dssp ---CCSGGGHHHHHHHHHHHHTT T ss_pred HHHHCCCHHHHHHHHHHHHHHHH T ss_conf 99873121248999999999986 Done!