Query gi|254780208|ref|YP_003064621.1| hypothetical protein CLIBASIA_00465 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 66
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 14:52:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780208.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k89_A PLA2P, PLAP, phospholip 9.8 91 0.0038 12.6 1.6 10 14-23 58-67 (80)
2 2p82_A Cysteine protease ATG4A 5.9 1.4E+02 0.0059 11.6 1.1 16 2-17 69-84 (355)
3 3g21_A GAG polyprotein, capsid 5.5 1.5E+02 0.0063 11.4 1.4 13 49-61 14-26 (77)
4 2kix_A BM2 protein; channel, t 5.3 1.5E+02 0.0064 11.4 2.6 16 47-62 7-22 (33)
5 2grc_A Probable global transcr 4.8 1.1E+02 0.0047 12.1 -0.3 34 30-63 56-89 (129)
6 2cy7_A Cysteine protease APG4B 4.7 1.7E+02 0.0071 11.1 1.1 16 2-17 73-88 (396)
7 1jrj_A Exendin-4; Trp-CAGE, GL 4.7 1.6E+02 0.0067 11.3 0.4 13 50-62 6-18 (39)
8 2jmk_A Hypothetical protein TA 3.9 1.5E+02 0.0064 11.4 -0.2 23 36-58 32-54 (111)
9 1eoq_A GAG polyprotein capsid 3.6 2.1E+02 0.0088 10.7 1.4 12 49-60 10-21 (96)
10 2i7k_A Bromodomain-containing 3.5 1.5E+02 0.0061 11.5 -0.5 33 31-63 47-79 (117)
No 1
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=9.83 E-value=91 Score=12.61 Aligned_cols=10 Identities=50% Similarity=1.168 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999766999
Q gi|254780208|r 14 FLDQIGNFLM 23 (66)
Q Consensus 14 fldqignflm 23 (66)
++|||-+|++
T Consensus 58 yldqI~~FI~ 67 (80)
T 2k89_A 58 FLDQVAKFII 67 (80)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 2
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol protease, transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=5.88 E-value=1.4e+02 Score=11.57 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 0699999999999999
Q gi|254780208|r 2 CIWGMMIRIMHLFLDQ 17 (66)
Q Consensus 2 ciwgmmirimhlfldq 17 (66)
+=||-|||-....|.|
T Consensus 69 ~GWGCMlRsgQMlLAq 84 (355)
T 2p82_A 69 AGWGCMLRCGQMMLAQ 84 (355)
T ss_dssp TTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 7724799999999999
No 3
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=5.46 E-value=1.5e+02 Score=11.43 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999997
Q gi|254780208|r 49 SFKSFISRFLHMI 61 (66)
Q Consensus 49 sfksfisrflhmi 61 (66)
+|..|+.||+.-+
T Consensus 14 pf~dfVdRl~~a~ 26 (77)
T 3g21_A 14 SFVDFANRLIKAV 26 (77)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 2999999999999
No 4
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=5.32 E-value=1.5e+02 Score=11.38 Aligned_cols=16 Identities=56% Similarity=0.663 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999971
Q gi|254780208|r 47 ISSFKSFISRFLHMIA 62 (66)
Q Consensus 47 issfksfisrflhmia 62 (66)
|-|.-|||-.-||.+|
T Consensus 7 ilsi~sfilsalhf~a 22 (33)
T 2kix_A 7 ILSISSFILSALHFIA 22 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 5
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 2h60_A
Probab=4.83 E-value=1.1e+02 Score=12.14 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3216889988887899999999999999999714
Q gi|254780208|r 30 NRHMSIKILKNTLTTAFISSFKSFISRFLHMIAN 63 (66)
Q Consensus 30 nrhmsikilkntlttafissfksfisrflhmian 63 (66)
.+.|++...++.|.....+|...|...+..|..|
T Consensus 56 ~~PmdL~~I~~kl~~~~Y~s~~~f~~D~~li~~N 89 (129)
T 2grc_A 56 RKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQN 89 (129)
T ss_dssp SSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 8987899999998762418799999999999999
No 6
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A
Probab=4.71 E-value=1.7e+02 Score=11.14 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 0699999999999999
Q gi|254780208|r 2 CIWGMMIRIMHLFLDQ 17 (66)
Q Consensus 2 ciwgmmirimhlfldq 17 (66)
|=||-|||--...|.|
T Consensus 73 ~GWGCMlRsgQMlLAq 88 (396)
T 2cy7_A 73 TGWGCMLRCGQMIFAQ 88 (396)
T ss_dssp TTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 7621899888899999
No 7
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=4.68 E-value=1.6e+02 Score=11.28 Aligned_cols=13 Identities=31% Similarity=0.278 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999971
Q gi|254780208|r 50 FKSFISRFLHMIA 62 (66)
Q Consensus 50 fksfisrflhmia 62 (66)
|.|-+|.+|.-.|
T Consensus 6 fTsD~s~yLe~~a 18 (39)
T 1jrj_A 6 FTSDLSKQMEEEA 18 (39)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 0076999999999
No 8
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=3.88 E-value=1.5e+02 Score=11.38 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99888878999999999999999
Q gi|254780208|r 36 KILKNTLTTAFISSFKSFISRFL 58 (66)
Q Consensus 36 kilkntlttafissfksfisrfl 58 (66)
+-|-..++...+.|...|||||-
T Consensus 32 ~~l~~v~~~~~~D~l~dFI~~yA 54 (111)
T 2jmk_A 32 SELYDIIDENDTDVMMDFISRFA 54 (111)
T ss_dssp HHHHHHTTSCCSSHHHHHHHHHC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99998743778589999999863
No 9
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=3.65 E-value=2.1e+02 Score=10.65 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780208|r 49 SFKSFISRFLHM 60 (66)
Q Consensus 49 sfksfisrflhm 60 (66)
+|..|+.||+.-
T Consensus 10 pf~dfVdRl~ka 21 (96)
T 1eoq_A 10 SFVDFANRLIKA 21 (96)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 899999999999
No 10
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=3.55 E-value=1.5e+02 Score=11.49 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 216889988887899999999999999999714
Q gi|254780208|r 31 RHMSIKILKNTLTTAFISSFKSFISRFLHMIAN 63 (66)
Q Consensus 31 rhmsikilkntlttafissfksfisrflhmian 63 (66)
+.|++...+.-+-.....|...|.+.+.-|..|
T Consensus 47 ~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 79 (117)
T 2i7k_A 47 HPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTN 79 (117)
T ss_dssp CCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 988899999998734779899999999999999
Done!