RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780208|ref|YP_003064621.1| hypothetical protein
CLIBASIA_00465 [Candidatus Liberibacter asiaticus str. psy62]
         (66 letters)



>gnl|CDD|146042 pfam03214, RGP, Reversibly glycosylated polypeptide. 
          Length = 349

 Score = 25.2 bits (55), Expect = 3.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 11/43 (25%)

Query: 33 MSIKILKNTLT----------TAFISSFKSFISRFLHMIANKD 65
          MS++IL + +           T F+  ++ F SRF H+I  KD
Sbjct: 1  MSLEILDDEVDIVIGALRANLTDFLEEWRPFFSRF-HLIIVKD 42


>gnl|CDD|147372 pfam05158, RNA_pol_Rpc34, RNA polymerase Rpc34 subunit.  Subunit
           specific to RNA Pol III, the tRNA specific polymerase.
           The C34 subunit of yeast RNA Pol III is part of a
           subcomplex of three subunits which have no counterpart
           in the other two nuclear RNA polymerases. This subunit
           interacts with TFIIIB70 and is therefore participates in
           Pol III recruitment.
          Length = 313

 Score = 25.0 bits (55), Expect = 5.1
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 7/43 (16%)

Query: 28  LRNR---HMSI--KILKNTLTTAFISSFKS--FISRFLHMIAN 63
           ++NR   H S+  K LK+  +  +I S KS    +R ++M+ N
Sbjct: 105 IKNRTNLHQSVLKKCLKSLESKKYIKSVKSVKAPTRKMYMLYN 147


>gnl|CDD|36238 KOG1020, KOG1020, KOG1020, Sister chromatid cohesion protein
            SCC2/Nipped-B [Chromatin structure and dynamics, Cell
            cycle control, cell division, chromosome partitioning,
            Replication, recombination and repair].
          Length = 1692

 Score = 24.6 bits (53), Expect = 6.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 10   IMHLFLDQI-GNFLMFFPMLRNRHMSIKILKNTL 42
            IM LFLD I  + L     L+ R ++IK+LK  L
Sbjct: 1336 IMQLFLDNILESCLDR--DLQVRLVAIKVLKLIL 1367


>gnl|CDD|31000 COG0655, WrbA, Multimeric flavodoxin WrbA [General function
           prediction only].
          Length = 207

 Score = 23.9 bits (51), Expect = 9.3
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 4   WGMMIRIMHLFLDQIGNFLMFFPMLRNRHMSIKILKNTLTTAFISSFKSFISRFLHM 60
           +G +   M  F+D+    L     LR +  +  +   +      ++  S +  FLH 
Sbjct: 87  FGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHH 143


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.342    0.145    0.458 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 804,816
Number of extensions: 34102
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 21
Length of query: 66
Length of database: 6,263,737
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,464,204
Effective search space: 158461916
Effective search space used: 158461916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 51 (23.5 bits)