RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780208|ref|YP_003064621.1| hypothetical protein
CLIBASIA_00465 [Candidatus Liberibacter asiaticus str. psy62]
         (66 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.6 bits (61), Expect = 0.68
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 16/56 (28%)

Query: 9   RIMHLFLDQIGNFLMFFPMLRNRHMSIKILKNTLTTAFISSFKSFISRFLHMIANK 64
           +++ +F  Q GN   +F  LR+       L  T        +   +   +   A  
Sbjct: 155 QLVAIFGGQ-GNTDDYFEELRD-------LYQT--------YHVLVGDLIKFSAET 194


>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans,
           hydrolase; 1.70A {Deinococcus radiodurans} SCOP:
           d.113.1.1 PDB: 1nqy_A
          Length = 194

 Score = 24.3 bits (52), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 3   IWGMMIRIMHLFLDQ 17
           IWGM  R++H  L+Q
Sbjct: 177 IWGMTARVLHDLLEQ 191


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.342    0.145    0.458 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 547,891
Number of extensions: 18418
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 14
Length of query: 66
Length of database: 5,693,230
Length adjustment: 37
Effective length of query: 29
Effective length of database: 4,796,202
Effective search space: 139089858
Effective search space used: 139089858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 50 (23.5 bits)