RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780208|ref|YP_003064621.1| hypothetical protein
CLIBASIA_00465 [Candidatus Liberibacter asiaticus str. psy62]
         (66 letters)



>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
          {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
          79679]}
          Length = 107

 Score = 23.3 bits (50), Expect = 6.1
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 28 LRNRHMSIKILKNTLTTAFISSFKSFISR 56
            +    +KI   ++T     S K  +++
Sbjct: 3  PDDEETLLKIAATSITGKNAESHKELLAK 31


>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
          {Archaeon Thermoplasma acidophilum, beta chain [TaxId:
          2303]}
          Length = 107

 Score = 22.9 bits (49), Expect = 7.3
 Identities = 4/27 (14%), Positives = 13/27 (48%)

Query: 30 NRHMSIKILKNTLTTAFISSFKSFISR 56
           + + +K+ + +L +   S  K  ++ 
Sbjct: 4  EKALLLKMAQTSLNSKSASVAKDKLAE 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.342    0.145    0.458 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 242,053
Number of extensions: 8149
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 9
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 47 (22.1 bits)