RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780208|ref|YP_003064621.1| hypothetical protein CLIBASIA_00465 [Candidatus Liberibacter asiaticus str. psy62] (66 letters) >d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Score = 23.3 bits (50), Expect = 6.1 Identities = 5/29 (17%), Positives = 12/29 (41%) Query: 28 LRNRHMSIKILKNTLTTAFISSFKSFISR 56 + +KI ++T S K +++ Sbjct: 3 PDDEETLLKIAATSITGKNAESHKELLAK 31 >d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Score = 22.9 bits (49), Expect = 7.3 Identities = 4/27 (14%), Positives = 13/27 (48%) Query: 30 NRHMSIKILKNTLTTAFISSFKSFISR 56 + + +K+ + +L + S K ++ Sbjct: 4 EKALLLKMAQTSLNSKSASVAKDKLAE 30 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.342 0.145 0.458 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 242,053 Number of extensions: 8149 Number of successful extensions: 41 Number of sequences better than 10.0: 1 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 9 Length of query: 66 Length of database: 2,407,596 Length adjustment: 35 Effective length of query: 31 Effective length of database: 1,927,046 Effective search space: 59738426 Effective search space used: 59738426 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.5 bits) S2: 47 (22.1 bits)