RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780209|ref|YP_003064622.1| hypothetical protein
CLIBASIA_00470 [Candidatus Liberibacter asiaticus str. psy62]
         (51 letters)



>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2,
          MAD, structural genomics, SAM, S-adenosylmethionine,
          MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
          (A:143-251)
          Length = 109

 Score = 27.3 bits (61), Expect = 0.82
 Identities = 5/22 (22%), Positives = 11/22 (50%)

Query: 28 KGPSKEEQARIEQIRAEARERR 49
          KG   E  A++ +++ + R   
Sbjct: 75 KGYVHEIGAQVAELKQQLRTEH 96


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 332,953
Number of extensions: 9053
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 5
Length of query: 51
Length of database: 4,956,049
Length adjustment: 22
Effective length of query: 29
Effective length of database: 4,212,339
Effective search space: 122157831
Effective search space used: 122157831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)