Query         gi|254780210|ref|YP_003064623.1| hypothetical protein CLIBASIA_00475 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 57
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Mon May 23 15:04:35 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780210.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1z9e_A PC4 and SFRS1 interact   5.6 1.5E+02  0.0044   13.3   0.0   14   13-26    112-125 (127)
  2 >2d0o_A DIOL dehydratase-react   5.4 1.7E+02  0.0052   12.9   0.3   16    6-21     97-112 (113)
  3 >1uf2_A Core protein P3; virus   4.2 1.7E+02  0.0051   12.9  -0.5   13   34-46     41-53  (105)
  4 >3brv_A Inhibitor of nuclear f   4.0 2.3E+02  0.0067   12.4  -0.0   15   19-33      2-16  (48)
  5 >1li5_A Cysrs, cysteinyl-tRNA    3.8 2.9E+02  0.0087   11.8   0.4   29    4-32     34-62  (90)
  6 >1vbk_A Hypothetical protein P   3.4 3.7E+02   0.011   11.3   0.9   12    3-14      5-16  (83)
  7 >2yr5_A Pro-enzyme of L-phenyl   3.4 3.7E+02   0.011   11.3   0.9   30   16-45    120-150 (367)
  8 >2dyo_B Autophagy protein 16;    3.4 3.8E+02   0.011   11.3   1.2   25   21-45      8-32  (57)
  9 >3kop_A Uncharacterized protei   3.2 3.5E+02    0.01   11.4   0.4   14    6-19     57-70  (188)
 10 >1f1s_A Hyaluronate lyase; the   3.2 3.3E+02  0.0098   11.6   0.2   10    7-16     12-21  (23)

No 1  
>>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} (A:)
Probab=5.60  E-value=1.5e+02  Score=13.26  Aligned_cols=14  Identities=43%  Similarity=0.579  Sum_probs=7.5

Q ss_pred             CCCCCCCCCHHHHH
Q ss_conf             21112104412221
Q gi|254780210|r   13 GKVAGEEAPRKKSE   26 (57)
Q Consensus        13 gkvageeaprkkse   26 (57)
                      .+++||++|+++.|
T Consensus       112 ~~~~~e~~~~~~~~  125 (127)
T 1z9e_A          112 TKDQGKKGPNKKLE  125 (127)
T ss_dssp             --------------
T ss_pred             HHHCCCCCCHHHCC
T ss_conf             54232326033211


No 2  
>>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} (A:405-437,A:512-591)
Probab=5.44  E-value=1.7e+02  Score=12.93  Aligned_cols=16  Identities=31%  Similarity=0.765  Sum_probs=5.6

Q ss_pred             ECCCCCCCCCCCCCCC
Q ss_conf             0143222211121044
Q gi|254780210|r    6 YGSLSDHGKVAGEEAP   21 (57)
Q Consensus         6 ygslsdhgkvageeap   21 (57)
                      ||-....|.+-|.|.|
T Consensus        97 y~iVaGrGNirg~eGP  112 (113)
T 2d0o_A           97 YRLVAGRGNIRGSEGP  112 (113)
T ss_dssp             SSCEEEECCGGGTSTT
T ss_pred             CCEECCCCCCCCCCCH
T ss_conf             9754167776568987


No 3  
>>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice dwarf virus} (A:142-229,A:972-988)
Probab=4.19  E-value=1.7e+02  Score=12.95  Aligned_cols=13  Identities=46%  Similarity=0.700  Sum_probs=9.5

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             3156688888764
Q gi|254780210|r   34 PQQENRKFIRRSE   46 (57)
Q Consensus        34 pqqenrkfirrse   46 (57)
                      .||+||+|.-|+.
T Consensus        41 Aq~~nr~~YvR~s   53 (105)
T 1uf2_A           41 AQRENRIFYQRKS   53 (105)
T ss_dssp             HHHHHHHHSEEEE
T ss_pred             HHHHHHHHHHHCC
T ss_conf             7888888886503


No 4  
>>3brv_A Inhibitor of nuclear factor kappa-B kinase subunit beta; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, acetylation, ATP-binding, cytoplasm, kinase; 2.20A {Synthetic} PDB: 3brt_A (A:)
Probab=3.99  E-value=2.3e+02  Score=12.38  Aligned_cols=15  Identities=47%  Similarity=0.485  Sum_probs=10.1

Q ss_pred             CCCHHHHHCCCCCCC
Q ss_conf             044122216122788
Q gi|254780210|r   19 EAPRKKSEQPKREPQ   33 (57)
Q Consensus        19 eaprkkseqpkrepq   33 (57)
                      -||-||||.---|.+
T Consensus         2 map~kKSEeLvaEa~   16 (48)
T 3brv_A            2 MAPAKKSEELVAEAH   16 (48)
T ss_dssp             ------CHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHH
T ss_conf             885111199999999


No 5  
>>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} (A:117-206)
Probab=3.75  E-value=2.9e+02  Score=11.82  Aligned_cols=29  Identities=28%  Similarity=0.331  Sum_probs=11.2

Q ss_pred             EEECCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf             23014322221112104412221612278
Q gi|254780210|r    4 VRYGSLSDHGKVAGEEAPRKKSEQPKREP   32 (57)
Q Consensus         4 vrygslsdhgkvageeaprkkseqpkrep   32 (57)
                      -.||.||.-..-.-....|.....-||.|
T Consensus        34 ~~YG~Ls~~~~~~~~~~~~~~~~~~K~~~   62 (90)
T 1li5_A           34 PTYGVLSRQDLDQLQAGARVDVVDDKRNP   62 (90)
T ss_dssp             TTTTTTTTC----------------CCST
T ss_pred             HHCCCCCCCCHHHHCCCCCCCCCCCCCCH
T ss_conf             20276344441210135655543233683


No 6  
>>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} (A:1-77,A:167-172)
Probab=3.43  E-value=3.7e+02  Score=11.31  Aligned_cols=12  Identities=33%  Similarity=0.900  Sum_probs=9.3

Q ss_pred             CEEECCCCCCCC
Q ss_conf             023014322221
Q gi|254780210|r    3 LVRYGSLSDHGK   14 (57)
Q Consensus         3 lvrygslsdhgk   14 (57)
                      |+|||.+.--|+
T Consensus         5 lirygEi~LKGk   16 (83)
T 1vbk_A            5 IVRYGEIGTKSR   16 (83)
T ss_dssp             EEEECCTTCCCS
T ss_pred             EEEECEEEECCC
T ss_conf             998440653287


No 7  
>>2yr5_A Pro-enzyme of L-phenylalanine oxidase; amino oxidase, flavoenzyme, oxidoreductase; HET: FAD; 1.25A {Pseudomonas SP} PDB: 2yr4_A* 2yr6_A* (A:1-102,A:142-171,A:336-471,A:623-721)
Probab=3.38  E-value=3.7e+02  Score=11.28  Aligned_cols=30  Identities=40%  Similarity=0.558  Sum_probs=22.2

Q ss_pred             CCCCCCHHHHHCCCCC-CCCHHHHHHHHHHH
Q ss_conf             1210441222161227-88315668888876
Q gi|254780210|r   16 AGEEAPRKKSEQPKRE-PQPQQENRKFIRRS   45 (57)
Q Consensus        16 ageeaprkkseqpkre-pqpqqenrkfirrs   45 (57)
                      -|..||-|--..|..| .-|-.||-.|||.-
T Consensus       120 fgdaapikvfpnpsneytlpv~envefi~~l  150 (367)
T 2yr5_A          120 FGDAAPIKVFPNPSNEYTLPVTENVEFIRNL  150 (367)
T ss_dssp             HCTTCBCCBCCCBTCEECCSSSSTHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCEEEECCCHHHHHHHH
T ss_conf             8775434335776764478558899999999


No 8  
>>2dyo_B Autophagy protein 16; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_B (B:)
Probab=3.36  E-value=3.8e+02  Score=11.27  Aligned_cols=25  Identities=32%  Similarity=0.535  Sum_probs=17.4

Q ss_pred             CHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             4122216122788315668888876
Q gi|254780210|r   21 PRKKSEQPKREPQPQQENRKFIRRS   45 (57)
Q Consensus        21 prkkseqpkrepqpqqenrkfirrs   45 (57)
                      .|||.......||...-..-.|||-
T Consensus         8 erkkakeersnpqtdsmddllirrl   32 (57)
T 2dyo_B            8 ERKKAKEERSNPQTDSMDDLLIRRL   32 (57)
T ss_dssp             --------------CHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             1256676404877450889999986


No 9  
>>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.90A {Arthrobacter SP} (A:)
Probab=3.25  E-value=3.5e+02  Score=11.45  Aligned_cols=14  Identities=43%  Similarity=0.344  Sum_probs=0.0

Q ss_pred             ECCCCCCCCCCCCC
Q ss_conf             01432222111210
Q gi|254780210|r    6 YGSLSDHGKVAGEE   19 (57)
Q Consensus         6 ygslsdhgkvagee   19 (57)
                      |.+.-.|.+++|++
T Consensus        57 ~~~~~~Ha~~SGe~   70 (188)
T 3kop_A           57 QSSQVFHGKYARNE   70 (188)
T ss_dssp             EEEECEECSSSSSE
T ss_pred             CCCEEEEEEEECCE
T ss_conf             77507789984676


No 10 
>>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} (A:293-315)
Probab=3.24  E-value=3.3e+02  Score=11.56  Aligned_cols=10  Identities=60%  Similarity=0.773  Sum_probs=0.0

Q ss_pred             CCCCCCCCCC
Q ss_conf             1432222111
Q gi|254780210|r    7 GSLSDHGKVA   16 (57)
Q Consensus         7 gslsdhgkva   16 (57)
                      ||.-||..||
T Consensus        12 gsyidhtnva   21 (23)
T 1f1s_A           12 GSYIDHTNVA   21 (23)
T ss_dssp             SCEEETTTEE
T ss_pred             CCEEECCCEE
T ss_conf             8667318866


Done!