Query gi|254780210|ref|YP_003064623.1| hypothetical protein CLIBASIA_00475 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 57 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Mon May 23 15:04:35 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780210.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1z9e_A PC4 and SFRS1 interact 5.6 1.5E+02 0.0044 13.3 0.0 14 13-26 112-125 (127) 2 >2d0o_A DIOL dehydratase-react 5.4 1.7E+02 0.0052 12.9 0.3 16 6-21 97-112 (113) 3 >1uf2_A Core protein P3; virus 4.2 1.7E+02 0.0051 12.9 -0.5 13 34-46 41-53 (105) 4 >3brv_A Inhibitor of nuclear f 4.0 2.3E+02 0.0067 12.4 -0.0 15 19-33 2-16 (48) 5 >1li5_A Cysrs, cysteinyl-tRNA 3.8 2.9E+02 0.0087 11.8 0.4 29 4-32 34-62 (90) 6 >1vbk_A Hypothetical protein P 3.4 3.7E+02 0.011 11.3 0.9 12 3-14 5-16 (83) 7 >2yr5_A Pro-enzyme of L-phenyl 3.4 3.7E+02 0.011 11.3 0.9 30 16-45 120-150 (367) 8 >2dyo_B Autophagy protein 16; 3.4 3.8E+02 0.011 11.3 1.2 25 21-45 8-32 (57) 9 >3kop_A Uncharacterized protei 3.2 3.5E+02 0.01 11.4 0.4 14 6-19 57-70 (188) 10 >1f1s_A Hyaluronate lyase; the 3.2 3.3E+02 0.0098 11.6 0.2 10 7-16 12-21 (23) No 1 >>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} (A:) Probab=5.60 E-value=1.5e+02 Score=13.26 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=7.5 Q ss_pred CCCCCCCCCHHHHH Q ss_conf 21112104412221 Q gi|254780210|r 13 GKVAGEEAPRKKSE 26 (57) Q Consensus 13 gkvageeaprkkse 26 (57) .+++||++|+++.| T Consensus 112 ~~~~~e~~~~~~~~ 125 (127) T 1z9e_A 112 TKDQGKKGPNKKLE 125 (127) T ss_dssp -------------- T ss_pred HHHCCCCCCHHHCC T ss_conf 54232326033211 No 2 >>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} (A:405-437,A:512-591) Probab=5.44 E-value=1.7e+02 Score=12.93 Aligned_cols=16 Identities=31% Similarity=0.765 Sum_probs=5.6 Q ss_pred ECCCCCCCCCCCCCCC Q ss_conf 0143222211121044 Q gi|254780210|r 6 YGSLSDHGKVAGEEAP 21 (57) Q Consensus 6 ygslsdhgkvageeap 21 (57) ||-....|.+-|.|.| T Consensus 97 y~iVaGrGNirg~eGP 112 (113) T 2d0o_A 97 YRLVAGRGNIRGSEGP 112 (113) T ss_dssp SSCEEEECCGGGTSTT T ss_pred CCEECCCCCCCCCCCH T ss_conf 9754167776568987 No 3 >>1uf2_A Core protein P3; virus components, icosahedral virus; 3.50A {Rice dwarf virus} (A:142-229,A:972-988) Probab=4.19 E-value=1.7e+02 Score=12.95 Aligned_cols=13 Identities=46% Similarity=0.700 Sum_probs=9.5 Q ss_pred CHHHHHHHHHHHH Q ss_conf 3156688888764 Q gi|254780210|r 34 PQQENRKFIRRSE 46 (57) Q Consensus 34 pqqenrkfirrse 46 (57) .||+||+|.-|+. T Consensus 41 Aq~~nr~~YvR~s 53 (105) T 1uf2_A 41 AQRENRIFYQRKS 53 (105) T ss_dssp HHHHHHHHSEEEE T ss_pred HHHHHHHHHHHCC T ss_conf 7888888886503 No 4 >>3brv_A Inhibitor of nuclear factor kappa-B kinase subunit beta; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, acetylation, ATP-binding, cytoplasm, kinase; 2.20A {Synthetic} PDB: 3brt_A (A:) Probab=3.99 E-value=2.3e+02 Score=12.38 Aligned_cols=15 Identities=47% Similarity=0.485 Sum_probs=10.1 Q ss_pred CCCHHHHHCCCCCCC Q ss_conf 044122216122788 Q gi|254780210|r 19 EAPRKKSEQPKREPQ 33 (57) Q Consensus 19 eaprkkseqpkrepq 33 (57) -||-||||.---|.+ T Consensus 2 map~kKSEeLvaEa~ 16 (48) T 3brv_A 2 MAPAKKSEELVAEAH 16 (48) T ss_dssp ------CHHHHHHHH T ss_pred CCCCCCCHHHHHHHH T ss_conf 885111199999999 No 5 >>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} (A:117-206) Probab=3.75 E-value=2.9e+02 Score=11.82 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=11.2 Q ss_pred EEECCCCCCCCCCCCCCCHHHHHCCCCCC Q ss_conf 23014322221112104412221612278 Q gi|254780210|r 4 VRYGSLSDHGKVAGEEAPRKKSEQPKREP 32 (57) Q Consensus 4 vrygslsdhgkvageeaprkkseqpkrep 32 (57) -.||.||.-..-.-....|.....-||.| T Consensus 34 ~~YG~Ls~~~~~~~~~~~~~~~~~~K~~~ 62 (90) T 1li5_A 34 PTYGVLSRQDLDQLQAGARVDVVDDKRNP 62 (90) T ss_dssp TTTTTTTTC----------------CCST T ss_pred HHCCCCCCCCHHHHCCCCCCCCCCCCCCH T ss_conf 20276344441210135655543233683 No 6 >>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} (A:1-77,A:167-172) Probab=3.43 E-value=3.7e+02 Score=11.31 Aligned_cols=12 Identities=33% Similarity=0.900 Sum_probs=9.3 Q ss_pred CEEECCCCCCCC Q ss_conf 023014322221 Q gi|254780210|r 3 LVRYGSLSDHGK 14 (57) Q Consensus 3 lvrygslsdhgk 14 (57) |+|||.+.--|+ T Consensus 5 lirygEi~LKGk 16 (83) T 1vbk_A 5 IVRYGEIGTKSR 16 (83) T ss_dssp EEEECCTTCCCS T ss_pred EEEECEEEECCC T ss_conf 998440653287 No 7 >>2yr5_A Pro-enzyme of L-phenylalanine oxidase; amino oxidase, flavoenzyme, oxidoreductase; HET: FAD; 1.25A {Pseudomonas SP} PDB: 2yr4_A* 2yr6_A* (A:1-102,A:142-171,A:336-471,A:623-721) Probab=3.38 E-value=3.7e+02 Score=11.28 Aligned_cols=30 Identities=40% Similarity=0.558 Sum_probs=22.2 Q ss_pred CCCCCCHHHHHCCCCC-CCCHHHHHHHHHHH Q ss_conf 1210441222161227-88315668888876 Q gi|254780210|r 16 AGEEAPRKKSEQPKRE-PQPQQENRKFIRRS 45 (57) Q Consensus 16 ageeaprkkseqpkre-pqpqqenrkfirrs 45 (57) -|..||-|--..|..| .-|-.||-.|||.- T Consensus 120 fgdaapikvfpnpsneytlpv~envefi~~l 150 (367) T 2yr5_A 120 FGDAAPIKVFPNPSNEYTLPVTENVEFIRNL 150 (367) T ss_dssp HCTTCBCCBCCCBTCEECCSSSSTHHHHHHH T ss_pred CCCCCCCCCCCCCCCCEEEECCCHHHHHHHH T ss_conf 8775434335776764478558899999999 No 8 >>2dyo_B Autophagy protein 16; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_B (B:) Probab=3.36 E-value=3.8e+02 Score=11.27 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=17.4 Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 4122216122788315668888876 Q gi|254780210|r 21 PRKKSEQPKREPQPQQENRKFIRRS 45 (57) Q Consensus 21 prkkseqpkrepqpqqenrkfirrs 45 (57) .|||.......||...-..-.|||- T Consensus 8 erkkakeersnpqtdsmddllirrl 32 (57) T 2dyo_B 8 ERKKAKEERSNPQTDSMDDLLIRRL 32 (57) T ss_dssp --------------CHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 1256676404877450889999986 No 9 >>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.90A {Arthrobacter SP} (A:) Probab=3.25 E-value=3.5e+02 Score=11.45 Aligned_cols=14 Identities=43% Similarity=0.344 Sum_probs=0.0 Q ss_pred ECCCCCCCCCCCCC Q ss_conf 01432222111210 Q gi|254780210|r 6 YGSLSDHGKVAGEE 19 (57) Q Consensus 6 ygslsdhgkvagee 19 (57) |.+.-.|.+++|++ T Consensus 57 ~~~~~~Ha~~SGe~ 70 (188) T 3kop_A 57 QSSQVFHGKYARNE 70 (188) T ss_dssp EEEECEECSSSSSE T ss_pred CCCEEEEEEEECCE T ss_conf 77507789984676 No 10 >>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} (A:293-315) Probab=3.24 E-value=3.3e+02 Score=11.56 Aligned_cols=10 Identities=60% Similarity=0.773 Sum_probs=0.0 Q ss_pred CCCCCCCCCC Q ss_conf 1432222111 Q gi|254780210|r 7 GSLSDHGKVA 16 (57) Q Consensus 7 gslsdhgkva 16 (57) ||.-||..|| T Consensus 12 gsyidhtnva 21 (23) T 1f1s_A 12 GSYIDHTNVA 21 (23) T ss_dssp SCEEETTTEE T ss_pred CCEEECCCEE T ss_conf 8667318866 Done!