Query gi|254780211|ref|YP_003064624.1| hypothetical protein CLIBASIA_00480 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 56 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 23 14:52:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780211.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1agg_A Omega-AGA-IVB, omega-ag 15.3 26 0.0011 16.8 -0.1 19 37-55 6-24 (48) 2 2oq2_A Phosphoadenosine phosph 8.8 60 0.0025 15.1 0.0 19 21-39 241-259 (261) 3 1n13_A PVLARGDC, pyruvoyl-depe 7.1 42 0.0018 15.8 -1.4 14 24-37 5-18 (52) 4 1iyc_A Scarabaecin; antifungal 4.7 1.5E+02 0.0062 13.2 0.2 18 13-30 6-23 (36) 5 1di2_A XLRBPA, double stranded 4.1 1.2E+02 0.0049 13.7 -0.6 24 26-49 29-52 (69) 6 2b7v_A Double-stranded RNA-spe 4.0 1.6E+02 0.0069 13.0 0.0 27 24-50 25-52 (71) 7 1n2m_A PVLARGDC, pyruvoyl-depe 4.0 1.5E+02 0.0061 13.2 -0.2 10 25-34 6-15 (165) 8 3dms_A Isocitrate dehydrogenas 3.9 2.6E+02 0.011 12.0 1.1 14 13-26 156-169 (427) 9 2a7o_A Huntingtin interacting 3.7 1.6E+02 0.0067 13.0 -0.3 18 24-41 79-96 (112) 10 2b7t_A Double-stranded RNA-spe 3.7 1.5E+02 0.0063 13.2 -0.4 25 26-50 31-55 (73) No 1 >1agg_A Omega-AGA-IVB, omega-agatoxin-IVB; neurotoxin, P-type calcium channel antagonist; NMR {Agelenopsis aperta} SCOP: g.3.6.2 PDB: 1oma_A 1omb_A 1iva_A 1oav_A 1oaw_A Probab=15.26 E-value=26 Score=16.80 Aligned_cols=19 Identities=37% Similarity=0.803 Sum_probs=15.6 Q ss_pred HHHHHCCHHHHHHHHHCCC Q ss_conf 4013112010334530358 Q gi|254780211|r 37 IKQYTNTAFGKSKCKRGRG 55 (56) Q Consensus 37 ikqytntafgkskckrgrg 55 (56) .+.|-.-.+|-.+|-|||+ T Consensus 6 a~dyg~c~wggt~ccrgr~ 24 (48) T 1agg_A 6 AEDYGKCTWGGTKCCRGRP 24 (48) T ss_dssp CCSSCBCCSSSCCBTTTBC T ss_pred HHHCCCCCCCCCCCCCCCC T ss_conf 1013524038964218997 No 2 >2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} Probab=8.80 E-value=60 Score=15.08 Aligned_cols=19 Identities=47% Similarity=0.779 Sum_probs=9.8 Q ss_pred ECCCCCHHHHEEEHHHHHH Q ss_conf 1256853452000112401 Q gi|254780211|r 21 ERTECPIHRYFKIAVFIKQ 39 (56) Q Consensus 21 ertecpihryfkiavfikq 39 (56) ++|||-||---+-+-++|| T Consensus 241 ~k~ECGlh~~~~~~~~~~~ 259 (261) T 2oq2_A 241 AKTECGIHEASRFAQFLKQ 259 (261) T ss_dssp --CCCTTTCCGGGSCC--- T ss_pred CCCCCCCCCCCCHHHHHHC T ss_conf 8765788888514677611 No 3 >1n13_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, agmatine, lyase; 1.40A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 1mt1_A 2qqc_A 2qqd_A Probab=7.06 E-value=42 Score=15.83 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=9.8 Q ss_pred CCCHHHHEEEHHHH Q ss_conf 68534520001124 Q gi|254780211|r 24 ECPIHRYFKIAVFI 37 (56) Q Consensus 24 ecpihryfkiavfi 37 (56) -.|||-||++.--+ T Consensus 5 i~~ih~~~~~Pkk~ 18 (52) T 1n13_A 5 INPLHAYFKLPNTV 18 (52) T ss_dssp --CCSCCCCCCCEE T ss_pred CCCCCCCCCCCCEE T ss_conf 25220443589679 No 4 >1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2 Probab=4.67 E-value=1.5e+02 Score=13.17 Aligned_cols=18 Identities=28% Similarity=0.639 Sum_probs=12.5 Q ss_pred EEEEEEEEECCCCCHHHH Q ss_conf 121120011256853452 Q gi|254780211|r 13 KTALVVVRERTECPIHRY 30 (56) Q Consensus 13 ktalvvvrertecpihry 30 (56) ...-|.+|.|..||-... T Consensus 6 pddkvlirsrsncpkgkv 23 (36) T 1iyc_A 6 PDDKVLIRSRSNCPKGKV 23 (36) T ss_dssp CSSSCCCTTTSCCCSSCE T ss_pred CCCEEEEEECCCCCCCCE T ss_conf 877078862168987641 No 5 >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Probab=4.08 E-value=1.2e+02 Score=13.66 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.7 Q ss_pred CHHHHEEEHHHHHHHHCCHHHHHH Q ss_conf 534520001124013112010334 Q gi|254780211|r 26 PIHRYFKIAVFIKQYTNTAFGKSK 49 (56) Q Consensus 26 pihryfkiavfikqytntafgksk 49 (56) +-.+.|.+.|.+.....++.|+|| T Consensus 29 ~h~~~F~~~v~v~~~~~~g~g~sK 52 (69) T 1di2_A 29 PHKREFTITCRVETFVETGSGTSK 52 (69) T ss_dssp GGGCEEEEEEEETTEEEEEEESSH T ss_pred CCCCEEEEEEEEECEEEECCCCCH T ss_conf 989779999999331765278979 No 6 >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Probab=3.95 E-value=1.6e+02 Score=12.97 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=20.3 Q ss_pred CCCH-HHHEEEHHHHHHHHCCHHHHHHH Q ss_conf 6853-45200011240131120103345 Q gi|254780211|r 24 ECPI-HRYFKIAVFIKQYTNTAFGKSKC 50 (56) Q Consensus 24 ecpi-hryfkiavfikqytntafgkskc 50 (56) +-|. .+.|.+.|.|...+-++.|+||- T Consensus 25 ~G~~h~~~F~~~v~v~~~~~~g~G~SKK 52 (71) T 2b7v_A 25 SGESHAKSFVMSVVVDGQFFEGSGRNKK 52 (71) T ss_dssp CCCTTTCCEEEEEECSSCEEEEEESSHH T ss_pred ECCCCCCCEEEEEEECCEEEEECCCCHH T ss_conf 8899997499999995799880689899 No 7 >1n2m_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase; pyruvoyl group, pyruvate, agmatine, lyase; 1.90A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 2qqd_C Probab=3.95 E-value=1.5e+02 Score=13.20 Aligned_cols=10 Identities=50% Similarity=1.168 Sum_probs=5.6 Q ss_pred CCHHHHEEEH Q ss_conf 8534520001 Q gi|254780211|r 25 CPIHRYFKIA 34 (56) Q Consensus 25 cpihryfkia 34 (56) -|||+||+|. T Consensus 6 ~~~~~~~~vP 15 (165) T 1n2m_A 6 NPLHAYFKLP 15 (165) T ss_dssp -CCSCCCCCC T ss_pred CCCCCCCCCC T ss_conf 5353545788 No 8 >3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Probab=3.89 E-value=2.6e+02 Score=11.99 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=11.3 Q ss_pred EEEEEEEEECCCCC Q ss_conf 12112001125685 Q gi|254780211|r 13 KTALVVVRERTECP 26 (56) Q Consensus 13 ktalvvvrertecp 26 (56) ...+|+|||.||-- T Consensus 156 ~iD~vIVREntEG~ 169 (427) T 3dms_A 156 KTNMVIFRENSEDI 169 (427) T ss_dssp GCCEEEEEECSSGG T ss_pred CCCEEEECCCCCCC T ss_conf 57658972476210 No 9 >2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens} Probab=3.70 E-value=1.6e+02 Score=13.04 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=7.4 Q ss_pred CCCHHHHEEEHHHHHHHH Q ss_conf 685345200011240131 Q gi|254780211|r 24 ECPIHRYFKIAVFIKQYT 41 (56) Q Consensus 24 ecpihryfkiavfikqyt 41 (56) ||+-.---|..-||+||- T Consensus 79 ~~~esVK~KakefI~kYM 96 (112) T 2a7o_A 79 ECNENVKHKTKEYIKKYM 96 (112) T ss_dssp SCCHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHH T ss_conf 236035788999999999 No 10 >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Probab=3.65 E-value=1.5e+02 Score=13.15 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=18.6 Q ss_pred CHHHHEEEHHHHHHHHCCHHHHHHH Q ss_conf 5345200011240131120103345 Q gi|254780211|r 26 PIHRYFKIAVFIKQYTNTAFGKSKC 50 (56) Q Consensus 26 pihryfkiavfikqytntafgkskc 50 (56) +-.+.|.+.|.|...+-++.|.||- T Consensus 31 ~h~~~F~~~v~v~g~~~~g~G~SKK 55 (73) T 2b7t_A 31 VHAPLFVMSVEVNGQVFEGSGPTKK 55 (73) T ss_dssp SSSCEEEEEEESSSSEEEEEESSHH T ss_pred CCCCEEEEEEEECCEEEECCCCCHH T ss_conf 9897799999999998886999899 Done!