RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780211|ref|YP_003064624.1| hypothetical protein
CLIBASIA_00480 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>gnl|CDD|177040 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
          Length = 1364

 Score = 25.7 bits (57), Expect = 3.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 2   IFSQIEGELFLKTALVVVRERTECPIHRYFK 32
           I+S  EGE+   T +    E T   +H   K
Sbjct: 440 IYSDSEGEMHWSTDVYHAPEFTYGNVHLLPK 470


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.329    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0762    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 644,791
Number of extensions: 22164
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 56
Length of database: 6,263,737
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,658,685
Effective search space: 158443180
Effective search space used: 158443180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.4 bits)