RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780211|ref|YP_003064624.1| hypothetical protein CLIBASIA_00480 [Candidatus Liberibacter asiaticus str. psy62] (56 letters) >gnl|CDD|177040 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed. Length = 1364 Score = 25.7 bits (57), Expect = 3.2 Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 2 IFSQIEGELFLKTALVVVRERTECPIHRYFK 32 I+S EGE+ T + E T +H K Sbjct: 440 IYSDSEGEMHWSTDVYHAPEFTYGNVHLLPK 470 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.329 0.141 0.420 Gapped Lambda K H 0.267 0.0762 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 644,791 Number of extensions: 22164 Number of successful extensions: 50 Number of sequences better than 10.0: 1 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 1 Length of query: 56 Length of database: 6,263,737 Length adjustment: 28 Effective length of query: 28 Effective length of database: 5,658,685 Effective search space: 158443180 Effective search space used: 158443180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 51 (23.4 bits)