RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780211|ref|YP_003064624.1| hypothetical protein
CLIBASIA_00480 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>gnl|CDD|179579 PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional.
          Length = 344

 Score = 26.4 bits (59), Expect = 1.8
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 13/46 (28%)

Query: 17  VVVRERTECPIHRYFKIAVFIKQYT----------NTAFGKSKCKR 52
           VVVRE TE P   Y      ++  T          NTAFG  +  R
Sbjct: 125 VVVREGTEGP---YTGNGGALRVGTPHEVATEVSVNTAFGVERVVR 167


>gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated.
          Length = 822

 Score = 25.3 bits (56), Expect = 3.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 6   IEGELFLKTALVVVRERTECPIHR 29
            EGEL  K A  ++RE  + P+ R
Sbjct: 109 REGELIGKEAYHILREVCQVPVKR 132


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.329    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 860,248
Number of extensions: 35711
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 3
Length of query: 56
Length of database: 5,994,473
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,389,449
Effective search space: 150904572
Effective search space used: 150904572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.2 bits)