BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780211|ref|YP_003064624.1| hypothetical protein
CLIBASIA_00480 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780211|ref|YP_003064624.1| hypothetical protein CLIBASIA_00480 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score =  115 bits (289), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MIFSQIEGELFLKTALVVVRERTECPIHRYFKIAVFIKQYTNTAFGKSKCKRGRGK 56
          MIFSQIEGELFLKTALVVVRERTECPIHRYFKIAVFIKQYTNTAFGKSKCKRGRGK
Sbjct: 1  MIFSQIEGELFLKTALVVVRERTECPIHRYFKIAVFIKQYTNTAFGKSKCKRGRGK 56


>gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 425

 Score = 23.1 bits (48), Expect = 0.98,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 12  LKTALVVVRERTECPIHRYFKIAVFIKQYTNTAFGK-SKCKRGRG 55
           L TA V+V +R+   I   ++++VF   Y + + G+ + C+ G G
Sbjct: 315 LGTAAVIVMDRSTDIIKAIWRLSVF---YKHESCGQCTPCREGTG 356


>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 559

 Score = 21.2 bits (43), Expect = 3.9,   Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 18  VVRERTECPIH 28
           V+ E  ECP+H
Sbjct: 356 VIAEDAECPVH 366


>gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide
          formyltransferase/IMP cyclohydrolase [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 536

 Score = 20.4 bits (41), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 8  GELFLKTALVVVRERT 23
          GE+ +KTAL+ V  +T
Sbjct: 12 GEIAVKTALISVHNKT 27


>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 228

 Score = 20.0 bits (40), Expect = 8.3,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 4   SQIEGELFLKTALVVVRE 21
           SQIEG LF    ++V+ +
Sbjct: 117 SQIEGHLFKGARVLVIED 134


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.141    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,007
Number of Sequences: 1233
Number of extensions: 745
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 56
length of database: 328,796
effective HSP length: 28
effective length of query: 28
effective length of database: 294,272
effective search space:  8239616
effective search space used:  8239616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 31 (16.5 bits)