HHsearch alignment for GI: 254780212 and conserved domain: COG1999
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only].
Probab=99.52 E-value=6.6e-14 Score=106.83 Aligned_cols=141 Identities=19% Similarity=0.279 Sum_probs=102.4
Q ss_pred CEEEECCCCCEEEHHHHCCCEEEEEEEECCCCC-CCCCCCCCCCCCCCCCC---CCCCCCCCCCCCC----CCCCCCCCC
Q ss_conf 307886999788289869985999965113676-63112610000000001---2333322234443----211112222
Q gi|254780212|r 12 HFVLPSNDEQEISLLALGGSKIVLYFYPKDDTS-GCTAEAINFSSLKADFD---EESTILIGISPDS----IASHKKFHQ 83 (157)
Q Consensus 12 ~f~l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp-~C~~e~~~l~~~~~~~~---~~gv~vv~is~d~----~~~~~~~~~ 83 (157)
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CEEEECCCCCEEECCCCCCCEEEEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHC
T ss_conf 657886899886123567988999975-5678974757999999999973643478489999987999998999999732
Q ss_pred -CCCCCCCCHH---HHHHHHHHHCCCCCCCCCCC--CCCCCCCEE-EEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf -1000000001---23445899859866665576--654442107-9998899979999768885789999999999850
Q gi|254780212|r 84 -KHNLSITLLA---DESKEVLKSYDVWKEKSMFG--KKYMGVVRT-TFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLK 156 (157)
Q Consensus 84 -~~~~~fpil~---D~~~~~~~~~gv~~~~~~~~--~~~~~~~r~-tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L~ 156 (157)
T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~---~~~i~~~l~~l~ 204 (207)
T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP---PEEIAADLKKLL 204 (207)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHCEEEEEECCCCCCCCEEECCEEEEEECCCCEEEEEECCCCC---HHHHHHHHHHHH
T ss_conf 16888862650898899999996161456512477776224144069998899829998458998---699999999986