HHsearch alignment for GI: 254780212 and conserved domain: COG3054
>COG3054 Predicted transcriptional regulator [General function prediction only].
Probab=95.14 E-value=0.043 Score=34.32 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=77.3
Q ss_pred CCCCCCCCCEEEEC-----CCC-----CEEEHHHHCCCEEEEEEEECCCCCCCCCCCC-CCCCC--CCCCCCCCCCC-CC
Q ss_conf 77986537307886-----999-----7882898699859999651136766311261-00000--00001233332-22
Q gi|254780212|r 4 LSVGDKAPHFVLPS-----NDE-----QEISLLALGGSKIVLYFYPKDDTSGCTAEAI-NFSSL--KADFDEESTIL-IG 69 (157)
Q Consensus 4 l~vG~~aP~f~l~~-----~~g-----~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~-~l~~~--~~~~~~~gv~v-v~ 69 (157)
T Consensus 23 lq~~q~vp~Vgv~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAG-Rt--saKE~Na~lieaIk~a~fp~~~YQTTTI 99 (184)
T COG3054 23 LQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAG-RT--SAKEKNATLIEAIKSAKFPHDRYQTTTI 99 (184)
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEECCCCHHHCCCHHHHHHHHHC-CC--CHHHHCHHHHHHHHHCCCCHHHCEEEEE
T ss_conf 42388379845344642886276200124526540440322336643-45--0655060899999864698678156677
Q ss_pred CCCCCCC-----CCCCCCCCCCCCCC---CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 3444321-----11122221000000---001234458998598666655766544421079998899979999768885
Q gi|254780212|r 70 ISPDSIA-----SHKKFHQKHNLSIT---LLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTL 141 (157)
Q Consensus 70 is~d~~~-----~~~~~~~~~~~~fp---il~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~ 141 (157)
T Consensus 100 iN~DDAi~GtgmFVkssae~~Kke~pwSq~vlD~~gvak~AWqL~e~-----------~SavvVlDk~G~VkfvkeGaLt 168 (184)
T COG3054 100 INTDDAIPGTGMFVKSSAESNKKEYPWSQFVLDSNGVAKNAWQLKEE-----------SSAVVVLDKDGRVKFVKEGALT 168 (184)
T ss_pred ECCCCCCCCCCCEEECCHHHCCCCCCCEEEEECCCHHHHHHHCCCCC-----------CCEEEEECCCCCEEEEECCCCC
T ss_conf 60577633433301132333543387303688453066665355666-----------6359998488868998638755
Q ss_pred CCCHHHHHHHHHHHHC
Q ss_conf 7899999999998509
Q gi|254780212|r 142 KNHAQSVLKMVKSLKQ 157 (157)
Q Consensus 142 ~~~~~eil~~i~~L~~ 157 (157)
T Consensus 169 ~aevQ~Vi~ll~~l~k 184 (184)
T COG3054 169 QAEVQQVIDLLQKLLK 184 (184)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8999999999997629