HHsearch alignment for GI: 254780212 and conserved domain: PRK13728
>PRK13728 conjugal transfer protein TrbB; Provisional.
Probab=97.34 E-value=0.00044 Score=46.57 Aligned_cols=99 Identities=12% Similarity=0.173 Sum_probs=63.5
Q ss_pred EECCCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 88699978828986998599996511367663112610000000001233332223444321111222210000000012
Q gi|254780212|r 15 LPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLAD 94 (157)
Q Consensus 15 l~~~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D 94 (157)
T Consensus 58 ~~LsdGr~vnl~dy~----lV~F~r-S~CPyChqFAP~Lk~~a~~~---gi~V~~~SlDG~g-----~~~FP~~lPa--- 121 (181)
T PRK13728 58 FRLSNGRQVNLADWK----VVLFMQ-GHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG-----DTAFPEALPA--- 121 (181)
T ss_pred EECCCCCEECCCCEE----EEEEEC-CCCCHHHHHCHHHHHHHHHH---CCEEEEEEECCCC-----CCCCCCCCCC---
T ss_conf 588999686243418----999973-88925776588999999985---9717998536988-----8788867779---
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE-ECCC
Q ss_conf 34458998598666655766544421079998899979999-7688
Q gi|254780212|r 95 ESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPV 139 (157)
Q Consensus 95 ~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~-~~~~ 139 (157)
T Consensus 122 -Tpei~~tfF--------~n-~~~~tPatFLvNvnT~~ayPv~qG~ 157 (181)
T PRK13728 122 -PPDVMQTFF--------PN-IPVATPTTFLVNVNTLEALPLLQGA 157 (181)
T ss_pred -CHHHHHHHC--------CC-CCCCCCEEEEEECCCCCEECCCCCC
T ss_conf -879999974--------78-9878861699733741100111165