HHsearch alignment for GI: 254780212 and conserved domain: TIGR01626

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626; InterPro: IPR006513 These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. .
Probab=96.84  E-value=0.0027  Score=41.72  Aligned_cols=139  Identities=19%  Similarity=0.203  Sum_probs=86.7

Q ss_pred             CCCCCCCCCEEEEC----------CCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCC-CCCCC--CCCCCCCCCCCC-C
Q ss_conf             77986537307886----------9997882898699859999651136766311261-00000--000012333322-2
Q gi|254780212|r    4 LSVGDKAPHFVLPS----------NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAI-NFSSL--KADFDEESTILI-G   69 (157)
Q Consensus         4 l~vG~~aP~f~l~~----------~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~-~l~~~--~~~~~~~gv~vv-~   69 (157)
T Consensus        23 L~v~q~vP~Vgv~~~GEivL~~~~~~yq~W~SA~LaGKVRV~~hiAG-Rt--saKE~Na~li~aIkaakfp~~~YQTTTI   99 (184)
T TIGR01626        23 LEVEQSVPAVGVEERGEIVLSDDDISYQKWRSAELAGKVRVVLHIAG-RT--SAKEKNASLIEAIKAAKFPAEKYQTTTI   99 (184)
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC-CC--HHHHCCCCHHHHHHHHCCCCCCCCCCEE
T ss_conf             12488589711135401675278400158741556415776565415-51--0011376189999863378767752114


Q ss_pred             CCCCCCC-----CCCCCCCCC--CCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf             3444321-----111222210--00000-001234458998598666655766544421079998899979999768885
Q gi|254780212|r   70 ISPDSIA-----SHKKFHQKH--NLSIT-LLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTL  141 (157)
Q Consensus        70 is~d~~~-----~~~~~~~~~--~~~fp-il~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~  141 (157)
T Consensus       100 iN~DDAI~GtgmFVkssa~~~Kke~PwSq~vlD~~g~v~nAWqL~~e~-----------SAiIVlDK~G~V~fVKeGaL~  168 (184)
T TIGR01626       100 INADDAIVGTGMFVKSSAKKSKKEYPWSQVVLDEKGVVKNAWQLKEED-----------SAIIVLDKDGKVKFVKEGALS  168 (184)
T ss_pred             EECCCCEECCCHHEECCHHCCCCCCCEEEEEECCHHHHHHHHCCCCCC-----------CEEEEECCCCCEEEEECCCCC
T ss_conf             506885006850101002107723780117886546887542145568-----------658897277735577557668


Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             789999999999850
Q gi|254780212|r  142 KNHAQSVLKMVKSLK  156 (157)
Q Consensus       142 ~~~~~eil~~i~~L~  156 (157)
T Consensus       169 ~~diQtV~~L~~~ll  183 (184)
T TIGR01626       169 EADIQTVVDLVQKLL  183 (184)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             135778999997632